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GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)
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A Python client for the high-level DMA API.
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Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.
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A NumPy port of the foldseek code for encoding protein structures to 3di.
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Physicochemical properties and indices for amino-acid sequences (ported from R).
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Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.
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Laura Bianchi - Ruprecht lab (CRG)
Gopi Shah - MIF
Nicola Gritti - MIF
Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish
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A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
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