Basic Statistics
Measure | Value |
---|---|
Filename | test2.R2.txt.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10000 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGGCAG | 15 | 0.0022876908 | 69.0 | 5 |
GCCAAGG | 15 | 0.0022876908 | 69.0 | 2 |
GATCTTA | 45 | 0.0044091824 | 30.666666 | 69 |
ACGATCT | 85 | 1.3086954E-4 | 24.352943 | 69 |
CGACGAT | 175 | 4.5656634E-9 | 21.685715 | 69 |
GACGATC | 120 | 5.616425E-5 | 20.125 | 69 |
CCGACGA | 200 | 2.1283995E-8 | 18.974998 | 68 |
GCCGACG | 215 | 4.8818038E-8 | 17.651163 | 67 |
TGCCGAC | 230 | 1.0560325E-7 | 16.5 | 66 |
CTGCCGA | 245 | 2.1704909E-7 | 15.489796 | 65 |
GCTGCCG | 285 | 1.2051441E-6 | 13.31579 | 64 |
CGCTGCC | 315 | 3.714349E-6 | 12.047619 | 63 |
ACGCTGC | 330 | 6.2510353E-6 | 11.5 | 62 |
GACGCTG | 355 | 1.4100724E-5 | 10.690141 | 61 |
TGACGCT | 365 | 1.919122E-5 | 10.397261 | 60 |
CTGACGC | 400 | 5.7889544E-4 | 8.624999 | 59 |
TCTGACG | 415 | 8.3589146E-4 | 8.313252 | 58 |
ATCTGAC | 430 | 0.0011897514 | 8.023256 | 57 |
CATCTGA | 465 | 0.0025776175 | 7.4193554 | 56 |
ACATCTG | 475 | 0.003176811 | 7.263158 | 55 |