Basic Statistics
Measure | Value |
---|---|
Filename | test1.R1.txt.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10000 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACTAA | 65 | 2.1014333E-5 | 31.846153 | 69 |
GAGACTA | 90 | 1.9288648E-4 | 23.0 | 68 |
CGAGACT | 130 | 4.1680214E-6 | 21.23077 | 69 |
ACGAGAC | 160 | 2.5068064E-5 | 17.25 | 68 |
CACGAGA | 175 | 5.4099008E-5 | 15.771429 | 67 |
CCACGAG | 180 | 6.8849724E-5 | 15.333333 | 66 |
CCCACGA | 190 | 1.09254295E-4 | 14.526315 | 65 |
GCCCACG | 195 | 1.3632367E-4 | 14.153847 | 64 |
CGAGCCC | 235 | 4.291479E-5 | 13.212766 | 61 |
AGCCCAC | 215 | 3.1233806E-4 | 12.83721 | 63 |
GAGCCCA | 230 | 5.5213826E-4 | 12.0 | 62 |
CCGAGCC | 250 | 0.0011127238 | 11.04 | 60 |