Basic Statistics
Measure | Value |
---|---|
Filename | test1.R2.txt.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10000 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 20 | 0.2 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAATAG | 65 | 8.069228E-4 | 26.538462 | 69 |
ACGAATA | 95 | 9.217221E-6 | 25.421051 | 69 |
GACGAAT | 130 | 1.0395372E-4 | 18.576923 | 68 |
CGACGAA | 150 | 3.1088226E-4 | 16.1 | 67 |
CCGACGA | 160 | 5.0829444E-4 | 15.093751 | 66 |
GCCGACG | 170 | 8.054502E-4 | 14.205883 | 65 |
TGCCGAC | 180 | 0.0012414283 | 13.416667 | 64 |
GCTGCCG | 220 | 3.7939253E-4 | 12.545454 | 62 |
CTGCCGA | 200 | 0.002745214 | 12.074999 | 63 |
CGCTGCC | 230 | 5.5213826E-4 | 12.0 | 61 |
ACGCTGC | 235 | 6.617818E-4 | 11.74468 | 60 |