FastQCFastQC Report
Wed 9 Nov 2016
test2.R1.txt.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametest2.R1.txt.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10000
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCAGGAG150.002287690869.03
GCCTGCA150.002287690869.02
CTCAGGA200.007148661751.7500042
GACTGTC400.00247569534.539
GACTCCT501.7331522E-434.49999669
ACGAGAC1703.265086E-922.3235369
GAGACTC800.002705428321.56250269
CGAGACT1154.045311E-521.069
CACGAGA1951.5907062E-819.46153868
CCACGAG2103.727473E-818.07142867
CCCACGA2201.2663368E-615.68181766
GCCCACG2405.2313793E-512.937565
AGCCCAC2701.5761542E-411.564
GAGCCCA2953.5897968E-410.52542363
CGAGCCC3207.607548E-49.70312562
TCTCCGA4106.916593E-59.25609858
CCGAGCC3400.00132695339.13235461
TCCGAGC3500.00172945628.871428560
CTCCGAG3904.4929466E-48.84615459
ATCTCCG4351.3215443E-48.72413757