FastQCFastQC Report
Wed 9 Nov 2016
test2.R2.txt.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametest2.R2.txt.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10000
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGCAG150.002287690869.05
GCCAAGG150.002287690869.02
GATCTTA450.004409182430.66666669
ACGATCT851.3086954E-424.35294369
CGACGAT1754.5656634E-921.68571569
GACGATC1205.616425E-520.12569
CCGACGA2002.1283995E-818.97499868
GCCGACG2154.8818038E-817.65116367
TGCCGAC2301.0560325E-716.566
CTGCCGA2452.1704909E-715.48979665
GCTGCCG2851.2051441E-613.3157964
CGCTGCC3153.714349E-612.04761963
ACGCTGC3306.2510353E-611.562
GACGCTG3551.4100724E-510.69014161
TGACGCT3651.919122E-510.39726160
CTGACGC4005.7889544E-48.62499959
TCTGACG4158.3589146E-48.31325258
ATCTGAC4300.00118975148.02325657
CATCTGA4650.00257761757.419355456
ACATCTG4750.0031768117.26315855