Basic Statistics
Measure | Value |
---|---|
Filename | test2.R1.txt.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10000 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAGGAG | 15 | 0.0022876908 | 69.0 | 3 |
GCCTGCA | 15 | 0.0022876908 | 69.0 | 2 |
CTCAGGA | 20 | 0.0071486617 | 51.750004 | 2 |
GACTGTC | 40 | 0.002475695 | 34.5 | 39 |
GACTCCT | 50 | 1.7331522E-4 | 34.499996 | 69 |
ACGAGAC | 170 | 3.265086E-9 | 22.32353 | 69 |
GAGACTC | 80 | 0.0027054283 | 21.562502 | 69 |
CGAGACT | 115 | 4.045311E-5 | 21.0 | 69 |
CACGAGA | 195 | 1.5907062E-8 | 19.461538 | 68 |
CCACGAG | 210 | 3.727473E-8 | 18.071428 | 67 |
CCCACGA | 220 | 1.2663368E-6 | 15.681817 | 66 |
GCCCACG | 240 | 5.2313793E-5 | 12.9375 | 65 |
AGCCCAC | 270 | 1.5761542E-4 | 11.5 | 64 |
GAGCCCA | 295 | 3.5897968E-4 | 10.525423 | 63 |
CGAGCCC | 320 | 7.607548E-4 | 9.703125 | 62 |
TCTCCGA | 410 | 6.916593E-5 | 9.256098 | 58 |
CCGAGCC | 340 | 0.0013269533 | 9.132354 | 61 |
TCCGAGC | 350 | 0.0017294562 | 8.8714285 | 60 |
CTCCGAG | 390 | 4.4929466E-4 | 8.846154 | 59 |
ATCTCCG | 435 | 1.3215443E-4 | 8.724137 | 57 |