FastQCFastQC Report
Wed 9 Nov 2016
test1.R2.txt.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametest1.R2.txt.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10000
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG200.2No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAATAG658.069228E-426.53846269
ACGAATA959.217221E-625.42105169
GACGAAT1301.0395372E-418.57692368
CGACGAA1503.1088226E-416.167
CCGACGA1605.0829444E-415.09375166
GCCGACG1708.054502E-414.20588365
TGCCGAC1800.001241428313.41666764
GCTGCCG2203.7939253E-412.54545462
CTGCCGA2000.00274521412.07499963
CGCTGCC2305.5213826E-412.061
ACGCTGC2356.617818E-411.7446860