diff --git a/src/Snakefile b/src/Snakefile index 571296fd97d97c4874bd6608077de1271ba560dd..47b75bf85b73d3bf86928369ddd4d9e5acc9f6d5 100755 --- a/src/Snakefile +++ b/src/Snakefile @@ -2130,7 +2130,7 @@ if nSamplesUnique > 1 and doPeakCalling: message: "{ruleDisplayMessage}Calculate PCA and sample correlation for consensus peaks for all peak files with the script {script_PCA}..." threads: 1 params: - GCString = GCBiasStr, + GCString = GCBiasStr #minOverlapValues = ",".join(map(str, rangeOverlap)) script: script_PCA @@ -2475,8 +2475,10 @@ rule multiqc: outputDir = lambda wildcards, output: os.path.dirname(output.report), basename = lambda wildcards, output: os.path.basename(output.report), rootDir = ROOT_dir, - config = workflow.source_path("config/multiqc_config.yaml") # see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#snakefiles-aux-source-files + #config = workflow.source_path("config/multiqc_config.yaml") # see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#snakefiles-aux-source-files + config = "/g/zaugg/carnold/Projects/AtacSeq/src/config/multiqc_config.yaml" # see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#snakefiles-aux-source-files conda: "condaEnvironments/multiqc.yaml" + singularity: singularity_conda shell: """