diff --git a/example/templates/cluster.json b/example/templates/cluster.json index dc03904022fbd263ec7173326d1f907f483baa3a..de748f533c7c0f24c5f6edb32924cc10a2361f35 100644 --- a/example/templates/cluster.json +++ b/example/templates/cluster.json @@ -3,7 +3,7 @@ "queueSLURM": "htc", "group": "zaugg", "nCPUs": "{threads}", - "memory": 10000, + "memory": 20000, "nodes": "avx2", "maxTime": "5:00:00", "qos": "normal", @@ -13,19 +13,19 @@ "willBeIgnored_canBeDeleted": "SEE ALSO BELOW IN THE RULES FOR MORE OCCURENCES OF OUTPUT AND ERROR FILES TO BE REPLACED" }, "fastqc_BT": { - "memory": 5000, + "memory": 10000, "maxTime": "2:00:00" }, "trimming_PE": { - "memory": 5000, + "memory": 10000, "maxTime": "10:00:00" }, "fastqc_AT": { - "memory": 5000, + "memory": 10000, "maxTime": "2:00:00" }, "Bowtie2_alignment": { - "memory": 15000, + "memory": 25000, "maxTime": "24:00:00" }, "samtools_SAM_TO_BAM": { @@ -33,15 +33,15 @@ "maxTime": "5:00:00" }, "Picard_cleanSAM": { - "memory": 5000, + "memory": 20000, "maxTime": "5:00:00" }, "Picard_FixMateInformation": { - "memory": 15000, + "memory": 25000, "maxTime": "5:00:00" }, "Picard_AddOrReplaceReadGroups": { - "memory": 5000, + "memory": 10000, "maxTime": "5:00:00" }, "Picard_ReorderSam": { @@ -65,7 +65,7 @@ "maxTime": "10:00:00" }, "postalign_remove_chrMAndUnassembledChr": { - "memory": 1000, + "memory": 10000, "maxTime": "5:00:00" }, "markDuplicates_Picardtools": { @@ -73,31 +73,31 @@ "maxTime": "10:00:00" }, "computeLibraryComplexity": { - "memory": 1000, + "memory": 10000, "maxTime": "2:00:00" }, "removeDuplicates": { - "memory": 1000, + "memory": 10000, "maxTime": "5:00:00" }, "postalign_MAPQ": { - "memory": 1000, + "memory": 10000, "maxTime": "5:00:00" }, "postaling_RSS": { - "memory": 1000, + "memory": 10000, "maxTime": "5:00:00" }, "Picard_sortFinal": { - "memory": 5000, + "memory": 10000, "maxTime": "5:00:00" }, "Picard_cleanSamFinal": { - "memory": 5000, + "memory": 20000, "maxTime": "5:00:00" }, "Picard_FixMateInformationFinal": { - "memory": 15000, + "memory": 25000, "maxTime": "5:00:00" }, "Picardtools_MergeSamFiles": { @@ -105,27 +105,27 @@ "maxTime": "5:00:00" }, "deepTools_computeGCBias": { - "memory": 5000, + "memory": 10000, "maxTime": "10:00:00" }, "deepTools_correctGCBias": { - "memory": 5000, + "memory": 10000, "maxTime": "10:00:00" }, "macs2_stringent": { - "memory": 5000, + "memory": 10000, "maxTime": "10:00:00" }, "macs2_nonStringent": { - "memory": 5000, + "memory": 10000, "maxTime": "10:00:00" }, "macs2_Encode": { - "memory": 5000, + "memory": 10000, "maxTime": "10:00:00" }, "filterPeaks": { - "memory": 5000, + "memory": 10000, "maxTime": "2:00:00", "output": "/YOUR_DIRECTORY/output/LOGS_AND_BENCHMARKS/{rule}.out", "error": "/YOUR_DIRECTORY/output/LOGS_AND_BENCHMARKS/{rule}.err" @@ -141,7 +141,7 @@ "maxTime": "5:00:00" }, "stats": { - "memory": 5000, + "memory": 10000, "maxTime": "10:00:00" }, "bamCoverage": { @@ -150,19 +150,19 @@ }, "deepTools_plotCoverage": { "memory": 10000, - "maxTime": "24:00:00" + "maxTime": "72:00:00" }, "deepTools_plotCoverageMerged": { "memory": 10000, - "maxTime": "24:00:00" + "maxTime": "72:00:00" }, "deepTools_correlationPlots": { "memory": 10000, - "maxTime": "24:00:00" + "maxTime": "72:00:00" }, "deepTools_correlationPlotsPooledSamples": { "memory": 10000, - "maxTime": "24:00:00" + "maxTime": "72:00:00" }, "deepTools_plotPCA_peaksOnly": { "memory": 10000, @@ -174,7 +174,7 @@ }, "deepTools_correlationPlotsPeaks": { "memory": 10000, - "maxTime": "10:00:00" + "maxTime": "72:00:00" }, "PCA_R": { "memory": 10000, @@ -182,6 +182,6 @@ }, "multiqc": { "memory": 10000, - "maxTime": "2:00:00" + "maxTime": "5:00:00" } }