diff --git a/example/input/params.sh b/example/input/params.sh index a7c4dbe2bfb1320b463d1f60d1d07feb11c19df1..877d77848491081a6553c31d384d28c0a125ad73 100644 --- a/example/input/params.sh +++ b/example/input/params.sh @@ -13,7 +13,7 @@ configFile="config.yaml" # Snakefile to use -snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakemake/dev/Snakefile" +snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakefile" ####################### # PERFORMANCE OPTIONS # @@ -89,7 +89,7 @@ runAlsoDownstreamRules=true rerunIncomplete=true # Should the WHOLE pipeline be rerun? use with care, setting this to true will rerun everything -forceRerunAll=false +forceRerunAll=true # Should Snakemake abort after the first error or continue running? abortAfterFirstError=false diff --git a/example/templates/params.sh b/example/templates/params.sh index 54648f6e91ab2487439fb54a1dde7c3430257d85..2fee27d167c8fb1cf684c61797f41d4bad04fe0e 100644 --- a/example/templates/params.sh +++ b/example/templates/params.sh @@ -13,7 +13,7 @@ configFile="config.yaml" # Snakefile to use -snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakemake/Snakefile" +snakefile="/g/scb2/zaugg/carnold/Projects/AtacSeq/src/Snakefile" ####################### # PERFORMANCE OPTIONS #