diff --git a/example/input/cluster.json b/example/input/cluster.json index f25a3569a70549ca5213d2f7cd03d3a78c10cfdf..3aacd3c94f35e494204450a69b96b0f1ae1032d2 100644 --- a/example/input/cluster.json +++ b/example/input/cluster.json @@ -39,6 +39,10 @@ "memory": 10000, "maxTime": "10:00:00" }, + "trimming_SE": { + "memory": 10000, + "maxTime": "10:00:00" + }, "fastqc_AT": { "memory": 10000, "maxTime": "2:00:00" @@ -64,7 +68,7 @@ "maxTime": "5:00:00" }, "Picard_ReorderSam": { - "memory": 10000, + "memory": 25000, "maxTime": "5:00:00" }, "GATK_baseRecalibration1": { @@ -190,5 +194,34 @@ "multiqc": { "memory": 10000, "maxTime": "5:00:00" + }, + "produceConsensusPeaks": { + "memory": 30000, + "maxTime": "15:00:00" + }, + "countReadsPeaks": { + "memory": 25000, + "maxTime": "10:00:00" + }, + "consensusPeaksPCA_correlation": { + "memory": 20000, + "maxTime": "10:00:00" + }, + "annotatePeaks_individual": { + "memory": 15000, + "maxTime": "5:00:00" + }, + "annotatePeaks_consensus": { + "memory": 15000, + "maxTime": "5:00:00" + }, + "deeptools_plotEnrichment_frip_individual": { + "memory": 20000, + "maxTime": "10:00:00" + }, + "deeptools_plotEnrichment_frip_consensusPeaks": { + "memory": 20000, + "maxTime": "10:00:00" } + } diff --git a/example/templates/cluster.json b/example/templates/cluster.json index f25a3569a70549ca5213d2f7cd03d3a78c10cfdf..3aacd3c94f35e494204450a69b96b0f1ae1032d2 100644 --- a/example/templates/cluster.json +++ b/example/templates/cluster.json @@ -39,6 +39,10 @@ "memory": 10000, "maxTime": "10:00:00" }, + "trimming_SE": { + "memory": 10000, + "maxTime": "10:00:00" + }, "fastqc_AT": { "memory": 10000, "maxTime": "2:00:00" @@ -64,7 +68,7 @@ "maxTime": "5:00:00" }, "Picard_ReorderSam": { - "memory": 10000, + "memory": 25000, "maxTime": "5:00:00" }, "GATK_baseRecalibration1": { @@ -190,5 +194,34 @@ "multiqc": { "memory": 10000, "maxTime": "5:00:00" + }, + "produceConsensusPeaks": { + "memory": 30000, + "maxTime": "15:00:00" + }, + "countReadsPeaks": { + "memory": 25000, + "maxTime": "10:00:00" + }, + "consensusPeaksPCA_correlation": { + "memory": 20000, + "maxTime": "10:00:00" + }, + "annotatePeaks_individual": { + "memory": 15000, + "maxTime": "5:00:00" + }, + "annotatePeaks_consensus": { + "memory": 15000, + "maxTime": "5:00:00" + }, + "deeptools_plotEnrichment_frip_individual": { + "memory": 20000, + "maxTime": "10:00:00" + }, + "deeptools_plotEnrichment_frip_consensusPeaks": { + "memory": 20000, + "maxTime": "10:00:00" } + }