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metaSNV
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Paul Igor Costea
metaSNV
Commits
5b908174
Commit
5b908174
authored
Apr 25, 2017
by
Robin Erich Muench
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db links
parent
2e7332a1
Changes
2
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2 changed files
with
7 additions
and
7 deletions
+7
-7
getRefDB.sh
getRefDB.sh
+6
-6
metaSNV.py
metaSNV.py
+1
-1
No files found.
getRefDB.sh
View file @
5b908174
...
...
@@ -4,12 +4,12 @@ download_9() {
[
-d
"db"
]
||
mkdir
-p
db
cd
db
echo
"Downloading the archive."
wget vm-lux.embl.de/~rmuench/files/
db_f
9.tar.bz2
wget vm-lux.embl.de/~rmuench/files/
freeze
9.tar.bz2
echo
"This might take up to 10 minutes."
echo
"Extracting files!"
echo
"Patience please..."
tar
xjvf
db_f
9.tar.bz2
rm
db_f
9.tar.bz2
tar
xjvf
freeze
9.tar.bz2
rm
freeze
9.tar.bz2
exit
}
...
...
@@ -17,12 +17,12 @@ download_11() {
[
-d
"db"
]
||
mkdir
-p
db
cd
db
echo
"Downloading the archive."
wget vm-lux.embl.de/~rmuench/files/
db_f
11.tar.bz2
wget vm-lux.embl.de/~rmuench/files/
freeze
11.tar.bz2
echo
"This might take up to 20 minutes."
echo
"Extracting files!"
echo
"Patience please..."
tar
xjvf
db_f
11.tar.bz2
rm
db_f
11.tar.bz2
tar
xjvf
freeze
11.tar.bz2
rm
freeze
11.tar.bz2
exit
}
...
...
metaSNV.py
View file @
5b908174
...
...
@@ -110,7 +110,7 @@ def split_opt(args):
if
not
args
.
print_commands
:
stderr
.
write
(
"Coverage files not found.
\n
"
)
else
:
stderr
.
write
(
"Coverage files not found.
\n
Finish running the commands prin
n
ted above and then run this command again.
\n
"
)
stderr
.
write
(
"Coverage files not found.
\n
Finish running the commands printed above and then run this command again.
\n
"
)
exit
(
1
)
for
f
in
cov_files
:
cmd
=
[
'python'
,
...
...
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