From ebe1b41d0303497fda9a1a74fa329031c4446815 Mon Sep 17 00:00:00 2001
From: Robin Erich Muench <robin.muench@embl.de>
Date: Sat, 29 Apr 2017 15:24:46 +0200
Subject: [PATCH] updated help message
---
metaSNV.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/metaSNV.py b/metaSNV.py
index f9e1e9e..8fcc7b1 100755
--- a/metaSNV.py
+++ b/metaSNV.py
@@ -227,7 +227,7 @@ def main():
help='File with an input list of bam files, one file per line')
parser.add_argument("ref_db", metavar='REF_DB_FILE',
help='reference multi-sequence FASTA file used for the alignments.')
- parser.add_argument('--db_ann', metavar='BED_FILE',default='',
+ parser.add_argument('--db_ann', metavar='DB_ANN_FILE',default='',
help='Database gene annotation.')
parser.add_argument('--print-commands', default=False, action='store_true',
help='Instead of executing the commands, simply print them out')
--
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