Commit a0a9c160 by Luis Pedro Coelho

MIN Better error messages

parent 3b6e9774
......@@ -43,8 +43,10 @@ def get_arguments():
# OPTIONAL arguments:
parser.add_argument('-b', metavar='FLOAT', type=float, help="Coverage breadth: Horizontal genome coverage percentage per sample per species", default=40.0)
parser.add_argument('-d', metavar='FLOAT', type=float, help="Coverage depth: Average vertical genome coverage per sample per species", default=5.0)
parser.add_argument('-b', metavar='FLOAT', type=float, default=40.0)
help="Coverage breadth: minimal horizontal genome coverage percentage per sample per species")
parser.add_argument('-d', metavar='FLOAT', type=float, default=5.0,
help="Coverage depth: minimal average vertical genome coverage per sample per species")
parser.add_argument('-m',metavar='INT', type=int, help="Minimum number of samples per species", default=2)
parser.add_argument('-c',metavar='FLOAT', type=float, help="FILTERING STEP II: minimum coverage per position per sample per species", default=5.0)
parser.add_argument('-p',metavar='FLOAT', type=float, help="FILTERING STEP II: required proportion of informative samples (coverage non-zero) per position", default=0.50)
......
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