From 5fc8be882c19f692e8d7aeecf78158e3abd93574 Mon Sep 17 00:00:00 2001
From: Nicolas Descostes <nicolas.descostes@embl.it>
Date: Tue, 24 Sep 2019 11:17:40 +0200
Subject: [PATCH] tutorial on chip-seq data

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 README.md | 17 ++++++++++++++++-
 1 file changed, 16 insertions(+), 1 deletion(-)

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 In this section we will look at practical aspects of manipulation of next-generation sequencing data. We will start with Fastq format produced by most sequencing machines and will finish with SAM/BAM format representing mapped reads.
 
-**Tutorial**:[Manipulating NGS data with Galaxy](https://galaxyproject.org/tutorials/ngs/).
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+**Tutorial**:[Manipulating NGS data with Galaxy](https://galaxyproject.org/tutorials/ngs/).
+
+## What is ChIP-Seq?
+
+**Slides**: [ChIP-seq data analysis](https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/formation_of_super-structures_on_xi/slides.html#1)
+
+## Process and analyze ChIP-Seq data
+
+In the upcoming tutorial, we will use wild type data from Wang et al. 2018 and analyze the ChIP-seq data step by step:
+
+  * CTCF with 2 replicates: wt_CTCF_rep1 and wt_CTCF_rep2
+  * H3K4me3 with 2 replicates: wt_H3K4me3_rep1 and wt_H3K4me3_rep2
+  * H3K27me3 with 2 replicates: wt_H3K27me3_rep1 and wt_H3K27me3_rep2
+  * ‘input’ with 2 replicates: wt_input_rep1 and wt_input_rep2
+
+**Tutorial**: [Formation of the Super-Structures on the Inactive X](https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/formation_of_super-structures_on_xi/tutorial.html).
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