diff --git a/recipes/mapping/bowtie2/Singularity.bowtie2-245 b/recipes/mapping/bowtie2/Singularity.bowtie2-245 index 073616bb6a0eb39e23f290f1c94419c155b42f5a..8b9822a8605f0a4ed98b10ee4e37903c2937f264 100644 --- a/recipes/mapping/bowtie2/Singularity.bowtie2-245 +++ b/recipes/mapping/bowtie2/Singularity.bowtie2-245 @@ -1,27 +1,12 @@ -BootStrap: docker -From: ubuntu:hirsute +Bootstrap: docker +From: quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2 -%help - This singularity install bowtie2 v2.4.5 +%runscript + echo "Running container quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2, Bowtie v2.4.5" + exec /bin/bash "$@" %post - - # ~~~~~~ General setup and folder creation ~~~~~~ # - - apt-get update && apt-get install -y wget bzip2 debootstrap - - # ~~~~~ MINICONDA 3.4.0.5 ~~~~~ # - wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh && \ - bash Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p /conda && \ - rm -f Miniconda3-4.7.12.1-Linux-x86_64.sh - export PATH="/conda/bin:${PATH}" - - # ~~~~~ bowtie2 2.4.5 ~~~~~ # - conda install -y -c bioconda bowtie2=2.4.5 - -%environment - export PATH="${PATH}:/conda/bin" + mkdir /cluster /work /tsd /projects %labels Author Nicolas Descostes - Version v0.0.1