diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index dfc6cc4bfca87fb7845c15956ffa22dfcfcab07d..85fc2f5a8f99b9f6d95060c77cea37e8d98200a6 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -47,25 +47,5 @@ include:
 # Mapping
 #####################
 
-bowtie2-241cv1-test:
-  extends: .templateTest
-  variables:
-    BASENAME: bowtie2
-    TAG: 241cv1
-    RECIPE_PATH: recipes/mapping/bowtie2
-
-
-bowtie2-245-test:
-  extends: .templateTest
-  variables:
-    BASENAME: bowtie2
-    TAG: 245
-    RECIPE_PATH: recipes/mapping/bowtie2
-
-
-#####################
-## Quality control
-#####################
-
 include:
   - local: "yaml-files/quality-control/fastqc-deploy.yaml"