diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 33122febb51481967b02d61c54b83d9d2be26c32..edd39585acc054bd5b1aca6e23647914e90964c8 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -30,35 +30,9 @@ image: - singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG - singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG -##################### -## Submission area -##################### - - -#fastqc-0119cv7-test: -# extends: .templateTest -# variables: -# BASENAME: fastqc -# TAG: 0119cv7 -# RECIPE_PATH: recipes/quality-control/fastqc/ - - -#fastqc-0119cv8-test: -# extends: .templateTest -# variables: -# BASENAME: fastqc -# TAG: 0119cv8 -# RECIPE_PATH: recipes/quality-control/fastqc/ - -#fastqc-0119cv6-test: -# extends: .templateTest -# variables: -# BASENAME: fastqc -# TAG: 0119cv6 -# RECIPE_PATH: recipes/quality-control/fastqc/ ##################### -# DeepLabCut +# Image analysis ##################### #deeplabcut-2202-test: @@ -83,33 +57,28 @@ deeplabcut-2202-builddeploy: ## Quality control ##################### -fastqc-0119cv7-builddeploy: - extends: .templateBuildDeploy - variables: - BASENAME: fastqc - TAG: 0119cv7 - RECIPE_PATH: recipes/quality-control/fastqc - only: - changes: - - recipes/quality-control/fastqc/Singularity.fastqc-0119cv7 +#fastqc-0119cv7-test: +# extends: .templateTest +# variables: +# BASENAME: fastqc +# TAG: 0119cv7 +# RECIPE_PATH: recipes/quality-control/fastqc/ -fastqc-0119cv8-builddeploy: - extends: .templateBuildDeploy - variables: - BASENAME: fastqc - TAG: 0119cv8 - RECIPE_PATH: recipes/quality-control/fastqc - only: - changes: - - recipes/quality-control/fastqc/Singularity.fastqc-0119cv8 +#fastqc-0119cv8-test: +# extends: .templateTest +# variables: +# BASENAME: fastqc +# TAG: 0119cv8 +# RECIPE_PATH: recipes/quality-control/fastqc/ -fastqc-0119cv6-builddeploy: - extends: .templateBuildDeploy - variables: - BASENAME: fastqc - TAG: 0119cv6 - RECIPE_PATH: recipes/quality-control/fastqc - only: - changes: - - recipes/quality-control/fastqc/Singularity.fastqc-0119cv6 +#fastqc-0119cv6-test: +# extends: .templateTest +# variables: +# BASENAME: fastqc +# TAG: 0119cv6 +# RECIPE_PATH: recipes/quality-control/fastqc/ + + +include: + - local: yaml-files/quality-control/fastqc-deploy.yaml diff --git a/yaml-files/quality-control/fastqc-deploy.yaml b/yaml-files/quality-control/fastqc-deploy.yaml new file mode 100644 index 0000000000000000000000000000000000000000..b2b883984f34c04c4abb57a385acc4b15bcd1981 --- /dev/null +++ b/yaml-files/quality-control/fastqc-deploy.yaml @@ -0,0 +1,30 @@ +fastqc-0119cv7-builddeploy: + extends: .templateBuildDeploy + variables: + BASENAME: fastqc + TAG: 0119cv7 + RECIPE_PATH: recipes/quality-control/fastqc + only: + changes: + - recipes/quality-control/fastqc/Singularity.fastqc-0119cv7 + + +fastqc-0119cv8-builddeploy: + extends: .templateBuildDeploy + variables: + BASENAME: fastqc + TAG: 0119cv8 + RECIPE_PATH: recipes/quality-control/fastqc + only: + changes: + - recipes/quality-control/fastqc/Singularity.fastqc-0119cv8 + +fastqc-0119cv6-builddeploy: + extends: .templateBuildDeploy + variables: + BASENAME: fastqc + TAG: 0119cv6 + RECIPE_PATH: recipes/quality-control/fastqc + only: + changes: + - recipes/quality-control/fastqc/Singularity.fastqc-0119cv6