From 77f6d882a9eae8ee6b5c56a677910db5d02a979f Mon Sep 17 00:00:00 2001
From: Nicolas Descostes <nicolas.descostes@embl.it>
Date: Thu, 21 Apr 2022 11:12:01 +0000
Subject: [PATCH] deeptools last version
---
.gitlab-ci.yml | 8 ++++++
.../deeptools/Singularity.deeptools-351 | 27 +++++++++++++++++++
2 files changed, 35 insertions(+)
create mode 100644 recipes/analysis-suites/deeptools/Singularity.deeptools-351
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 2a46440..8fcebf8 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -37,6 +37,14 @@ image:
## WRITE YOUR TEST RULE HERE AFTER BRANCHING ON SUBMISSION AND CREATE A MERGE REQUEST
+deeptools-351-test:
+ extends: .templateTest
+ variables:
+ BASENAME: deeptools
+ TAG: 351
+ RECIPE_PATH: recipes/analysis-suites/deeptools
+
+
#####################
# Image analysis
#####################
diff --git a/recipes/analysis-suites/deeptools/Singularity.deeptools-351 b/recipes/analysis-suites/deeptools/Singularity.deeptools-351
new file mode 100644
index 0000000..968777c
--- /dev/null
+++ b/recipes/analysis-suites/deeptools/Singularity.deeptools-351
@@ -0,0 +1,27 @@
+Bootstrap: docker
+From: ubuntu:focal
+
+%help
+ This singularity install deeptools
+
+%post
+
+ # ~~~~~~ General setup and folder creation ~~~~~~ #
+
+ apt-get update && apt-get install -y wget bzip2
+
+ # ~~~~~ MINICONDA 3.4.0.5 ~~~~~ #
+ wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh && \
+ bash Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p /conda && \
+ rm -f Miniconda3-4.7.12.1-Linux-x86_64.sh
+ export PATH="/conda/bin:${PATH}"
+
+ # ~~~~~ deeptools v3.5.1 ~~~~~ #
+ conda install -c bioconda deeptools=3.5.1
+
+%environment
+ export PATH="${PATH}:/conda/bin"
+
+%labels
+ Author Nicolas Descostes
+ Version v0.0.1
--
GitLab