From a9e2a8d0cad3a7d86382ae7564bd8e00152ec0eb Mon Sep 17 00:00:00 2001
From: descoste <descoste@pc-bioinf01.embl.de>
Date: Thu, 21 Apr 2022 10:23:37 +0200
Subject: [PATCH] move bowtie2 to mapping section

---
 .gitlab-ci.yml | 12 +++++++++---
 1 file changed, 9 insertions(+), 3 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 02fe539..2a46440 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -45,10 +45,16 @@ include:
   - local: "yaml-files/image-analysis/deeplabcut-deploy.yaml"
 
 #####################
-# Mapping
+# Quality control
 #####################
 
 include:
   - local: "yaml-files/quality-control/fastqc-deploy.yaml"
-  - local: "yaml-files/quality-control/bowtie2-deploy.yaml"
-  
\ No newline at end of file
+
+
+#####################
+# Mapping
+#####################
+
+include:
+  - local: "yaml-files/mapping/bowtie2-deploy.yaml"
-- 
GitLab