diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4e4d4d7067a47d2f7bd71d8f258f6847367c6062..adcb0848c99daeb18f2f96eb106578bc04042029 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -36,13 +36,6 @@ image: ## WRITE YOUR TEST RULE HERE AFTER BRANCHING ON SUBMISSION AND CREATE A MERGE REQUEST -parallelfastqdump-063-test: - extends: .templateTest - variables: - BASENAME: parallelfastqdump - TAG: 063 - RECIPE_PATH: recipes/fastq-operations/parallelfastqdump - hiddendomains-31-test: extends: .templateTest variables: diff --git a/recipes/fastq-operations/parallelfastqdump/Singularity.parallelfastqdump-063 b/recipes/fastq-operations/parallelfastqdump/Singularity.parallelfastqdump-063 deleted file mode 100644 index 01578ce7a18cad7e87f0b7cd56b750939c31da2b..0000000000000000000000000000000000000000 --- a/recipes/fastq-operations/parallelfastqdump/Singularity.parallelfastqdump-063 +++ /dev/null @@ -1,27 +0,0 @@ -BootStrap: docker -From: ubuntu:bionic - -%help - This singularity install parallel-fastq-dump v0.6.3. - -%post - - # ~~~~~~ General setup and folder creation ~~~~~~ # - - apt-get update && apt-get install -y wget bzip2 - - # ~~~~~ MINICONDA 3.4.0.5 ~~~~~ # - wget https://repo.anaconda.com/miniconda/Miniconda3-4.0.5-Linux-x86_64.sh && \ - bash Miniconda3-4.0.5-Linux-x86_64.sh -b -p /conda && \ - rm -f Miniconda3-4.0.5-Linux-x86_64.sh - export PATH="/conda/bin:${PATH}" - - # ~~~~~ parallel-fastq-dump 0.6.3 ~~~~~ # - conda install -y -c bioconda parallel-fastq-dump=0.6.3 - -%environment - export PATH="${PATH}:/conda/bin" - -%labels - Author Nicolas Descostes - Version v0.0.2