From f373b1cf6c6789e047faf8406b50f382aec95bed Mon Sep 17 00:00:00 2001
From: Nicolas Descostes <nicolas.descostes@embl.it>
Date: Fri, 8 Apr 2022 09:13:34 +0200
Subject: [PATCH] modify with template
---
.gitlab-ci.yml | 26 +++++++++++++-------------
1 file changed, 13 insertions(+), 13 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 8ced58f..54df9b1 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,29 +1,29 @@
# See https://docs.gitlab.com/ee/ci/yaml/index.html for all available options
-stages:
- - buildPushImage
-image:
+.template:
+ stage: buildPushImage
+ tags:
+ - docker7
+ image:
name: quay.io/singularity/singularity:v3.8.4
- entrypoint: [""]
+ entrypoint: [ "" ]
+ script:
+ - singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
+ - singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
+
+
#####################
## Quality control
#####################
-build-push-singularity-fastqc:
- tags:
- - docker7
- stage: buildPushImage
+fastqc-0119:
variables:
BASENAME: fastqc
TAG: 0119
RECIPE_PATH: recipes/quality-control/
- script:
- - singularity build container.sif $RECIPE_PATH/Singularity.$BASENAME-$TAG
- - echo $CI_COMMIT_SHORT_SHA
- - singularity push --docker-username gitlab-ci-token --docker-password $CI_JOB_TOKEN container.sif oras://"$CI_REGISTRY_IMAGE"/$BASENAME:$TAG
only:
changes:
- - recipes/quality-control/Singularity.fastqc-0119
+ - recipes/quality-control/fastqc/Singularity.fastqc-0119
--
GitLab