diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ff6ea7554dc9b6154fa0fe70164fb201d23228e3..02fe539fe97dd305a7b2ff85b20c3f9e0f40e86f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -36,20 +36,6 @@ image:
 
 ## WRITE YOUR TEST RULE HERE AFTER BRANCHING ON SUBMISSION AND CREATE A MERGE REQUEST
 
-bowtie2-241cv1-test:
-  extends: .templateTest
-  variables:
-    BASENAME: bowtie2
-    TAG: 241cv1
-    RECIPE_PATH: recipes/quality-control/bowtie2
-
-bowtie2-245-test:
-  extends: .templateTest
-  variables:
-    BASENAME: bowtie2
-    TAG: 245
-    RECIPE_PATH: recipes/quality-control/bowtie2
-
 
 #####################
 # Image analysis
@@ -64,3 +50,5 @@ include:
 
 include:
   - local: "yaml-files/quality-control/fastqc-deploy.yaml"
+  - local: "yaml-files/quality-control/bowtie2-deploy.yaml"
+  
\ No newline at end of file
diff --git a/recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1 b/recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1
index 71bebf47885c86955456560947321137f20e2ba2..25e57fd5193f675b9be5d905a40e70c44193f23f 100644
--- a/recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1
+++ b/recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1
@@ -10,3 +10,4 @@ From: biocontainers/bowtie2:v2.4.1_cv1
 
 %labels
     Author Nicolas Descostes
+
diff --git a/recipes/quality-control/bowtie2/Singularity.bowtie2-245 b/recipes/quality-control/bowtie2/Singularity.bowtie2-245
index 16bfa98f757badc9bd5a0fc7b92f393564ca1f6c..cb6fd33a09ef05a50121b51a18fa0e6cab30fa56 100644
--- a/recipes/quality-control/bowtie2/Singularity.bowtie2-245
+++ b/recipes/quality-control/bowtie2/Singularity.bowtie2-245
@@ -10,3 +10,4 @@ From: quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2
 
 %labels
     Author Nicolas Descostes
+
diff --git a/yaml-files/quality-control/bowtie2-deploy.yaml b/yaml-files/quality-control/bowtie2-deploy.yaml
new file mode 100644
index 0000000000000000000000000000000000000000..208e6079d7b90f0e76e89e9bb696e79f30b9d785
--- /dev/null
+++ b/yaml-files/quality-control/bowtie2-deploy.yaml
@@ -0,0 +1,20 @@
+bowtie2-245-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/quality-control/bowtie2
+  only:
+    changes:
+      - recipes/quality-control/bowtie2/Singularity.bowtie2-245
+
+bowtie2-241cv1-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/quality-control/bowtie2
+  only:
+    changes:
+      - recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1
+
diff --git a/yaml-files/quality-control/bowtie2-test.backup b/yaml-files/quality-control/bowtie2-test.backup
new file mode 100644
index 0000000000000000000000000000000000000000..688424a1022b94f2fb4e7aeb39f2c749d4a1e4e9
--- /dev/null
+++ b/yaml-files/quality-control/bowtie2-test.backup
@@ -0,0 +1,13 @@
+bowtie2-241cv1-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/quality-control/bowtie2
+
+bowtie2-245-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/quality-control/bowtie2