diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 9729611df1d0776c4a427891d85c7f70f795b68d..ea3470c256427bd72079520c21558e98f1a93348 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -50,6 +50,15 @@ image: # TAG: 0119cv8 # RECIPE_PATH: recipes/quality-control/fastqc/ +fastqc-0119cv6-test: + extends: .templateTest + variables: + BASENAME: fastqc + TAG: 0119cv6 + RECIPE_PATH: recipes/quality-control/fastqc/ + + + ##################### ## Quality control ##################### diff --git a/recipes/quality-control/fastqc/Singularity.fastqc-0119cv6 b/recipes/quality-control/fastqc/Singularity.fastqc-0119cv6 new file mode 100644 index 0000000000000000000000000000000000000000..065a181bd4f2655d10b1030fa072b27134c96439 --- /dev/null +++ b/recipes/quality-control/fastqc/Singularity.fastqc-0119cv6 @@ -0,0 +1,12 @@ +Bootstrap: docker +From: biocontainers/fastqc:v0.11.9_cv6 + +%runscript + echo "Running container biocontainers/fastqc:v0.11.9_cv6, FastQC v0.11.9" + exec /bin/bash "$@" + +%post + mkdir /cluster /work /tsd /projects + +%labels + Author Nicolas Descostes