diff --git a/yaml-files/quality-control/bowtie2-deploy.yaml b/yaml-files/quality-control/bowtie2-deploy.yaml
new file mode 100644
index 0000000000000000000000000000000000000000..208e6079d7b90f0e76e89e9bb696e79f30b9d785
--- /dev/null
+++ b/yaml-files/quality-control/bowtie2-deploy.yaml
@@ -0,0 +1,20 @@
+bowtie2-245-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/quality-control/bowtie2
+  only:
+    changes:
+      - recipes/quality-control/bowtie2/Singularity.bowtie2-245
+
+bowtie2-241cv1-builddeploy:
+  extends: .templateBuildDeploy
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/quality-control/bowtie2
+  only:
+    changes:
+      - recipes/quality-control/bowtie2/Singularity.bowtie2-241cv1
+
diff --git a/yaml-files/quality-control/bowtie2-test.backup b/yaml-files/quality-control/bowtie2-test.backup
new file mode 100644
index 0000000000000000000000000000000000000000..688424a1022b94f2fb4e7aeb39f2c749d4a1e4e9
--- /dev/null
+++ b/yaml-files/quality-control/bowtie2-test.backup
@@ -0,0 +1,13 @@
+bowtie2-241cv1-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 241cv1
+    RECIPE_PATH: recipes/quality-control/bowtie2
+
+bowtie2-245-test:
+  extends: .templateTest
+  variables:
+    BASENAME: bowtie2
+    TAG: 245
+    RECIPE_PATH: recipes/quality-control/bowtie2