singularityhub-EMBLRome merge requestshttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests2022-04-08T14:41:40Zhttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/1test2022-04-08T14:41:40ZNicolas DescostestestNicolas DescostesNicolas Descosteshttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/2Test2022-04-08T14:58:10ZNicolas DescostesTesthttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/3Test2022-04-08T15:02:36ZNicolas DescostesTesthttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/4add CI_MERGE_REQUEST_APPROVED2022-04-11T08:19:19ZNicolas Descostesadd CI_MERGE_REQUEST_APPROVEDNicolas DescostesNicolas Descosteshttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/5test for fastqc2022-04-13T09:24:32ZNicolas Descostestest for fastqcNicolas DescostesNicolas Descosteshttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/6test manual2022-04-13T09:46:44ZNicolas Descostestest manualNicolas DescostesNicolas Descosteshttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/7test again2022-04-13T09:53:37ZNicolas Descostestest againNicolas DescostesNicolas Descosteshttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/8fastqc-0119cv6-test2022-04-13T10:52:38ZNicolas Descostesfastqc-0119cv6-testNicolas DescostesNicolas Descosteshttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/9Add deeplabcut Singularity recipe2022-04-13T18:35:07ZFrancesco TabaroAdd deeplabcut Singularity recipeI added the recipe for a Deeplabcut image. It extends the regular Docker image with ResNet weights in the correct folder and fixes file permissions to allow rw operations.
In addition I fixed the CI file to not have double forward slash...I added the recipe for a Deeplabcut image. It extends the regular Docker image with ResNet weights in the correct folder and fixes file permissions to allow rw operations.
In addition I fixed the CI file to not have double forward slashes when building the recipe path in the build command.https://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/10bowtie22022-04-16T08:46:31ZNicolas Descostesbowtie2Two versions addedTwo versions addedhttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/11bowtie22022-04-16T09:15:55ZNicolas Descostesbowtie2https://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/12deeptools last version2022-04-21T11:12:01ZNicolas Descostesdeeptools last versionhttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/13fasterq hidden macs2 picard2022-04-21T12:56:07ZNicolas Descostesfasterq hidden macs2 picardhttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/14picard 2212022-04-21T18:22:19ZNicolas Descostespicard 221https://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/15add samtools 1.1.42022-04-21T20:00:54ZNicolas Descostesadd samtools 1.1.4https://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/16picard 22212022-04-21T20:30:52ZNicolas Descostespicard 2221https://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/17samtools 1.152022-04-22T06:29:22ZNicolas Descostessamtools 1.15https://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/18test parallel fastq dump2022-04-22T07:04:38ZNicolas Descostestest parallel fastq dumphttps://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/19picard 2 22 12022-04-22T07:57:10ZNicolas Descostespicard 2 22 1https://git.embl.de/descoste/singularityhub-emblrome/-/merge_requests/20picard 22712022-04-22T08:07:33ZNicolas Descostespicard 2271