BootStrap: docker From: ubuntu:bionic %help This singularity installs picard tools v 2.22.1 %post # ~~~~~~ General setup and folder creation ~~~~~~ # apt-get update && apt-get install -y wget libreadline-dev export LC_ALL=C export LC_CTYPE=C export LC_COLLATE=C export LC_TIME=C export LC_MESSAGES=C export LC_MONETARY=C export LC_PAPER=C export LC_MEASUREMENT=C # ~~~~~ MINICONDA ~~~~~ # wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \ bash Miniconda3-latest-Linux-x86_64.sh -b -p /conda && \ rm -f Miniconda3-latest-Linux-x86_64.sh export PATH="/conda/bin:${PATH}" # ~~~~ R v 4.1.2 ~~~~~~ # conda install -c conda-forge r-base=4.1.2 # ~~~~~ PICARD TOOLS ~~~~~ # conda install -y -c bioconda picard=2.22.1 %environment export PATH="${PATH}:/conda/bin" export LC_ALL=C export LC_CTYPE=C export LC_COLLATE=C export LC_TIME=C export LC_MESSAGES=C export LC_MONETARY=C export LC_PAPER=C export LC_MEASUREMENT=C %labels Author Nicolas Descostes Version v0.0.1