Explore projects

R package to read, register and compare point sets from single molecule localization microscopy.

An R API to the agrotoxin database using R6 objects.

Cyntha van den Berg - Utrecht University; Anna Akhmanova - Utrecht University; Sebastian Schnorrenberg - ICLM; Ziqiang Huang - ICLM; Line Filter, Intensity Profile Plot, Fiji

GRaNIE R package for building eGRNs

Notes and SLURM templates for using AlphaFold and related tools on the EMBL HD cluser

Extends the Rarr package to deal with images in ome-zarr format.

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Physicochemical properties and indices for amino-acid sequences (ported from R).

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking