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Cython bindings and Python interface to HMMER3.

EMBL Python User Group

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

EMBL Python User Group

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Collaborator, Collaborator - Group;

Keyword, Keyword

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

Server to implement image analysis jobs for online use (e.g. in feedback microscopy), including adapters to ilastik and TensorFlow.

A NumPy port of the foldseek code for encoding protein structures to 3di.

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.