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Martin Larralde / PySWRD
GNU General Public License v3.0 onlyCython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.
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Martin Larralde / PyFastANI
MIT LicenseCython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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Martin Larralde / Torch TreeCRF
MIT LicenseA PyTorch implementation of Tree-structured Conditional Random Fields.
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Dmitrii Olisov / WTFi
MIT LicenseUpdated -
Simone Procaccia / Crockode
MIT LicenseUpdated -
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CBBCS / create-band
GNU General Public License v3.0 onlyUpdated -
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Martin Larralde / PytrimAl
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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Martin Larralde / mini3di
GNU General Public License v3.0 onlyA NumPy port of the foldseek code for encoding protein structures to 3di.
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Valentin Maurer / ebi-em-client
GNU Affero General Public License v3.0Updated -
Kerim Anlas - Trivedi lab;
Kristina Stapornwongkul - Trivedi lab;
Nicola Gritti - MIF
Keywords: bioimage analysis, python, HCR, gastruloids, Opera PE, MIF, support, nextflow
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