Explore projects

This is an example how snakemake can detected failed slurm jobs.

A simple workflow for scRNAseq analysis

helping scripts

Scripts associated with the paper, "Local transcriptional context influences isoform expression in abruptly reorganized yeast genomes"

This repository includes the exact commands/instructions in order to set up and run the integrative modelling of ScNPC adapted from Allegretti et al. (2020).

sasciftools repository compatible with Python3

Example client for the SASBDB REST API

Example client for the SASBDB REST API

Cyro-ET analysis of ribo-decorated mitos in glucose-depleted S. pombe cells

Scripts to minimize atomic structures, for example, from AlphaFold.

Materials for a Bio-IT Workshop on Regular Expressions

Read-only mirror of: https://github.com/tobyhodges/regex-introduction

Website at: https://grp-bio-it-workshops.embl-community.io/regex-introduction

A Python package for dealing with cross-linking/MS data

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.