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Cython bindings and Python interface to HMMER3.

Centre for Bioimage Analysis

Demo of a Poissonian Cellular-Potts model

Cuylen Lab

Alina Ritz- Heard Group;

Christian Tischer, Arif Khan - CBA;

Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;

A NumPy port of the foldseek code for encoding protein structures to 3di.

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Physicochemical properties and indices for amino-acid sequences (ported from R).

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

Python interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.