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Roman Belousov / dycpm
Creative Commons Attribution 4.0 InternationalDemo of a Poissonian Cellular-Potts model
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CBA / astrocyte-differentiations
MIT LicenseAlina Ritz- Heard Group;
Christian Tischer, Arif Khan - CBA;
Nextflow, python, nuclear cytoplasmic intensity measurements, MoBIE;
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Zimmermann-Kogadeeva Group / NanoCLUST
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Martin Larralde / mini3di
BSD 3-Clause "New" or "Revised" LicenseA NumPy port of the foldseek code for encoding protein structures to 3di.
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Renato Alves / embltilities
GNU General Public License v3.0 onlyUpdated -
Krim Anlas - Trivedi lab;
Nicola Gritti - MIF
Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking
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Martin Larralde / peptides.py
GNU General Public License v3.0 onlyPhysicochemical properties and indices for amino-acid sequences (ported from R).
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Nick Marschlich - Trivedi lab;
Nicola Gritti - MIF
Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking
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Zimmermann-Kogadeeva Group / GEMsembler
MIT LicenseGEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)
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Martin Larralde / Pyrodigal
GNU General Public License v3.0 onlyPython interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.
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Martin Larralde / lightmotif
MIT LicenseA lightweight platform-accelerated library for biological motif scanning using position weight matrices.
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