Explore projects

Command line tool to download raw reads from ENA

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.

Code for PCAWG related analyses

SNV calling software

A INPHARMA data

Quick paired-end deinterlacer for Galaxy.

SNV calling software

Scripts associated with the paper "Disentangling the impact of genetic and environmental factors on the proteotypes across individuals"

Code to design smFISH probes

VBA Macro for ZEN black to perform FCS measurements and acquire images for FCS calibrated imaging

A simple workflow for scRNAseq analysis

A repository for materials associated with teaching image analysis. See https://grp-bio-it.embl-community.io/image-analysis-training-resources/ for rendered pages.

files for git training