Initial commit

ansible.cfg

+[defaults]
+# Disable checking of keys when ssh'ing to unknown hosts
+host_key_checking = False
+interpreter_python=/g/bork3/home/fullam/miniconda3/envs/we/bin/python
+
+[ssh_connection]
+ssh_args= -o ServerAliveInterval=30
+
+[py3-hosts:vars]
+ansible_python_interpreter=/g/bork3/home/fullam/miniconda3/envs/we/bin/python

cron_playbook.yaml

+- name: Mongo DB Operations
+  hosts: eta
+
+  tasks:
+    - name: Add mailto to crontab
+      ansible.builtin.cron:
+        name: MAILTO
+        env: yes
+        job: anthony.fullam@embl.de
+    
+    - name: Backup DB
+      ansible.builtin.cron:
+        name: "Backup DB"
+        weekday: "1"
+        hour: "5"
+        minute: "0"
+        job: "singularity run instance://mongo mongodump --quiet --uri=\"mongodb://mag_readwrite:password_mag_readwrite@127.0.0.1:26016\" -o /var/lib/mongo/backup/mags_`date '+%Y-%m-%d'` --gzip"
+
+    - name: Add new motus runs to db
+      ansible.builtin.cron:
+        name: "Add new motus runs to DB"
+        weekday: "1"
+        hour: "7"
+        minute: "0"
+        job: "/g/bork3/home/fullam/.cargo/bin/fd . /g/bork5/mocat/ngless-processing/motus-v2.5 --type d --max-depth 1 --changed-within 8d -x /g/bork3/home/fullam/miniconda3/envs/we/bin/python /g/scb2/bork/fullam/bin/crons/add_motus_run_to_db.py {}"
+
+
+- name: INFO PORTAL Operations
+  hosts: theta
+
+  tasks:
+    - name: Add mailto to crontab
+      ansible.builtin.cron:
+        name: MAILTO
+        env: yes
+        job: anthony.fullam@embl.de
+    
+    - name: Daily Update
+      ansible.builtin.cron:
+        name: "Daily Update"
+        hour: "23"
+        minute: "0"
+        job: "/g/scb2/bork/fullam/bin/crons/daily_update_info_portal.sh"
+
+    - name: Weekly Update
+      ansible.builtin.cron:
+        name: "Weekly Update"
+        weekday: "6"
+        hour: "23"
+        minute: "0"
+        job: "/g/scb2/bork/fullam/bin/crons/weekly_update_info_portal.sh"
+
+    - name: ENA Watcher
+      ansible.builtin.cron:
+        name: "ENA Watcher"
+        weekday: "3"
+        hour: "0"
+        minute: "0"
+        job: "/g/bork3/home/fullam/miniconda3/envs/we/bin/python /g/scb2/bork/fullam/bin/crons/ena_watcher.py"
+

hosts

+[servers]
+alpha
+beta
+epsilon
+eta
+sigma
+theta
+upsilon
+
+[micro_cluster]
+m-micro        ansible_host=micro
+m-compute-0-0  ansible_host=compute-0-0  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q micro"'
+m-compute-0-1  ansible_host=compute-0-1  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q micro"'
+
+[upsilon_cluster]
+u-upsilon      ansible_host=upsilon
+u-compute-0-0  ansible_host=compute-0-0  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-1  ansible_host=compute-0-1  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-2  ansible_host=compute-0-2  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-3  ansible_host=compute-0-3  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-4  ansible_host=compute-0-4  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-5  ansible_host=compute-0-5  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-6  ansible_host=compute-0-6  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-7  ansible_host=compute-0-7  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-8  ansible_host=compute-0-8  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-9  ansible_host=compute-0-9  ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+u-compute-0-10 ansible_host=compute-0-10 ansible_ssh_common_args='-o ProxyCommand="ssh -W %h:%p -q upsilon"'
+
+[mocat]
+theta
+
+[embl]
+login.cluster.embl.de
+

mocat_playbook.yaml

+- hosts: theta
+  vars:
+      ansible_user: mocat
+  tasks:
+      - cron:
+          name: MAILTO
+          env: yes
+          value: "mocat@embl.de"
+
+      - cron:
+          name: "TMPDIR cleanup"
+          minute: "0"
+          hour: "0"
+          weekday: "1"
+          job: "/g/bork3/home/mocat/projects/dotfiles/bin/cleanup_all_tmp.sh"
+          # set state to absent if you want to delete this rule from destination host
+          state : present
+
+- hosts: upsilon-cluster
+  vars:
+      ansible_user: mocat
+  tasks:
+      - cron:
+          name: "Syncthing local"
+          special_time: "reboot"
+          job: "/g/bork3/home/mocat/projects/dotfiles/bin/syncthing-cluster"
+          # set state to absent if you want to delete this rule from destination host
+          state : present
+
+- hosts: micro-cluster
+  vars:
+      ansible_user: mocat 
+  tasks:
+      - cron:
+          name: "Syncthing local"
+          special_time: "reboot"
+          job: "/g/bork3/home/mocat/projects/dotfiles/bin/syncthing-cluster"
+          # set state to absent if you want to delete this rule from destination host
+          state : present
+

profiles_playbook.yaml

+- name: Bash Profiles
+  hosts: servers
+
+  tasks:
+    - name: Copy bashrc to home
+      ansible.builtin.copy:
+        src: /g/bork3/home/fullam/.bashrc
+        dest: ~/.bashrc
+        mode: '0644'
+        backup: yes
+
+    - name: Copy bash_profile to home
+      ansible.builtin.copy:
+        src: /g/bork3/home/fullam/.bash_profile
+        dest: ~/.bash_profile
+        mode: '0644'
+        backup: yes
+
+- name: Bash Profiles embl
+  hosts: embl
+
+  tasks:
+    - name: Copy bash_profile to home
+      ansible.builtin.copy:
+        src: /g/bork3/home/fullam/.bashrc
+        dest: ~/.bash_profile
+        mode: '0644'
+        backup: yes