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GBCS
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  • Issues 9
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  • GBCS
  • Issues

  • Open 9
  • Closed 3
  • All 12
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual
  • Tags added during WF at the collection level are ignored   0 of 3 tasks completed
    galaxy-dataset-exporter#8 · opened May 31, 2019 by Charles Girardot
    • 0
    updated May 31, 2019
  • also export .bai with the .bam
    galaxy-dataset-exporter#5 · opened Oct 17, 2018 by Jelle Scholtalbers
    • 1
    • 1
    updated May 17, 2019
  • ensure the galaxy system user is part of the group when executing a command i.e. chrgrp/sg
    galaxy-dataset-exporter#4 · opened Oct 17, 2018 by Jelle Scholtalbers
    • 0
    updated Oct 17, 2018
  • also handle html / composite datasets
    galaxy-dataset-exporter#3 · opened Oct 16, 2018 by Jelle Scholtalbers
    • 0
    updated Oct 16, 2018
  • Push to the toolshed
    galaxy-dataset-exporter#2 · opened Oct 11, 2018 by Jelle Scholtalbers   release
    • 0
    updated Oct 11, 2018
  • try/except on chgrp on exported file
    galaxy-dataset-exporter#1 · opened Oct 10, 2018 by Jelle Scholtalbers
    • 0
    updated Oct 10, 2018
  • Add an option to specify the fastq input format
    Je#4 · opened Mar 08, 2018 by Charles Girardot
    • 1
    updated Mar 08, 2018
  • tracking the number of removed duplicated reads in a SAM flag - je markdupes removeduplicates
    Je#3 · opened Nov 10, 2017 by Thomas Schwarzl
    • 0
    updated Nov 10, 2017
  • Appending barcodes at the end of read names prevent Picard MarkDuplicates from identifying any optical duplicates
    Je#2 · opened Jul 24, 2017 by Charles Girardot
    • 1
    updated Jul 24, 2017