Commit 2a5d5fd0 authored by Aliaksandr Halavatyi's avatar Aliaksandr Halavatyi
Browse files

update of pom and exchange of class name from fly-reg

parent 400fdc6f
......@@ -15,7 +15,7 @@
<groupId>embl.almf</groupId>
<version>1.0.7-SNAPSHOT</version>
<version>1.0.8-SNAPSHOT</version>
<name>Fly_Embryo_Feedback</name>
<inceptionYear>2017</inceptionYear>
......@@ -69,11 +69,23 @@
<enforcer.skip>true</enforcer.skip>
</properties>
<repositories>
<repository>
<id>imagej.public</id>
<url>http://maven.imagej.net/content/groups/public</url>
</repository>
<repository>
<id>bintray-tischi-snapshots</id>
<name>bintray</name>
<url>https://dl.bintray.com/tischi/snapshots</url>
<id>jitpack.io</id>
<url>https://jitpack.io</url>
</repository>
<repository>
<id>imagej.releases</id>
<url>http://maven.imagej.net/content/repositories/releases</url>
</repository>
<repository>
<id>imagej.snapshots</id>
<url>http://maven.imagej.net/content/repositories/snapshots</url>
</repository>
</repositories>
......@@ -94,7 +106,7 @@
<dependency>
<groupId>de.embl.cba</groupId>
<artifactId>fly-reg</artifactId>
<version>0.1.0</version>
<version>0.1.1</version>
</dependency>
</dependencies>
......
......@@ -10,8 +10,8 @@ import automic.online.jobs.Job_Default;
import automic.parameters.ParameterCollection;
import automic.parameters.ParameterType;
import automic.table.TableModel;
import de.embl.cba.flyreg.FlyEmbryoNerveCordRegistration;
import de.embl.cba.flyreg.FlyEmbryoRegistrationSettings;
import de.embl.cba.flyreg.FlyEmbryoSingleChannelRegistration;
import de.embl.cba.morphometry.Utils;
import ij.IJ;
import net.imagej.ImageJ;
......@@ -176,7 +176,7 @@ public class Job_FocusEmbryoAutoDatasetSplit extends Job_Default{
final FlyEmbryoRegistrationSettings settings = new FlyEmbryoRegistrationSettings();
settings.onlyComputeEllipsoidParameters = true;
final FlyEmbryoSingleChannelRegistration registration = new FlyEmbryoSingleChannelRegistration( settings, opService );
final FlyEmbryoNerveCordRegistration registration = new FlyEmbryoNerveCordRegistration( settings, opService );
final double[] calibration = Utils.getCalibration( _imageCalibration );
......
......@@ -4,8 +4,9 @@ package algorithm.tests;
import java.io.File;
import de.embl.cba.flyreg.FlyEmbryoNerveCordRegistration;
import de.embl.cba.flyreg.FlyEmbryoRegistrationSettings;
import de.embl.cba.flyreg.FlyEmbryoSingleChannelRegistration;
//import de.embl.cba.flyreg.FlyEmbryoSingleChannelRegistration;
import ij.ImagePlus;
import loci.plugins.BF;
......@@ -32,7 +33,7 @@ public class FindEmbryoOrientationTischi {
final FlyEmbryoRegistrationSettings settings = new FlyEmbryoRegistrationSettings();
settings.onlyComputeEllipsoidParameters = true;
final FlyEmbryoSingleChannelRegistration registration = new FlyEmbryoSingleChannelRegistration( settings, opService );
final FlyEmbryoNerveCordRegistration registration = new FlyEmbryoNerveCordRegistration( settings, opService );
registration.run(imagePlus, 0);
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment