rotaion log to the table

src/main/java/feedback/fly/embryo/jobdistributors/JobDistributor_AutoSelectionMultiple_AFocus_Rotation.java

@@ -13,7 +13,7 @@ import automic.parameters.gui.ParameterGuiManager;
 import automic.table.TableModel;
 import automic.table.TableProcessor;
 import feedback.fly.embryo.jobs.Job_AutofocusInitOffset;
-import feedback.fly.embryo.jobs.Job_FocusEmbryoAuto;
+import feedback.fly.embryo.jobs.Job_FocusEmbryoAutoRotation;
 import feedback.fly.embryo.jobs.Job_SelectMultipleEmbryosAutoRotation;
 
 
@@ -61,7 +61,7 @@ public class JobDistributor_AutoSelectionMultiple_AFocus_Rotation extends JobDis
 		super.addImageJob(job2,	"DE_2_",  "LZ.Image",	true);
 		
 
-		Job_FocusEmbryoAuto job3=new Job_FocusEmbryoAuto();
+		Job_FocusEmbryoAutoRotation job3=new Job_FocusEmbryoAutoRotation();
 		ParameterCollection job3Parameters=job3.createJobParameters();
 		job3Parameters.setUndefinedValuesFromDefaults();
 		ParameterGuiManager pgManager3=new ParameterGuiManager(job3Parameters);

src/main/java/feedback/fly/embryo/jobs/Job_FocusEmbryoAuto.java

@@ -26,7 +26,10 @@ import loci.plugins.BF;
 import loci.plugins.in.ImporterOptions;
 
 public class Job_FocusEmbryoAuto  extends Job_Default{
+
 	public static final String KEY_FOCUS_CHANNEL_INDEX="Focus channel index";
+	public static final String KEY_WAIT_IMAGE_OPENING="Wait for image opening (milliseconds)";
+
 	
 	
 	//private static final Roi nullRoi=null;
@@ -37,6 +40,8 @@ public class Job_FocusEmbryoAuto  extends Job_Default{
 	private Integer zSubmit;
 
 	private int targetChannel=1;
+	private int imageOpeningTimeDelay=3000;
+
 	
 	@Override
 	protected void cleanIterOutput(){
@@ -71,7 +76,7 @@ public class Job_FocusEmbryoAuto  extends Job_Default{
 		
 		
 		//img=ImageOpenerWithBioformats.openImage(newImgFile);
-		TimeUnit.MILLISECONDS.sleep(3000);
+		TimeUnit.MILLISECONDS.sleep(imageOpeningTimeDelay);
 		img=openSelectedSlices(newImgFile);
 	}
 	
@@ -193,6 +198,8 @@ public class Job_FocusEmbryoAuto  extends Job_Default{
 		ParameterCollection jobCollection=new ParameterCollection();
 		
 		jobCollection.addParameter(KEY_FOCUS_CHANNEL_INDEX, null, targetChannel, ParameterType.INT_PARAMETER);
+		jobCollection.addParameter(KEY_WAIT_IMAGE_OPENING,null, imageOpeningTimeDelay, ParameterType.INT_PARAMETER);
+
 		
 		return jobCollection;
 	}
@@ -200,6 +207,7 @@ public class Job_FocusEmbryoAuto  extends Job_Default{
 	@Override
 	public void parseInputParameterValues(ParameterCollection _jobParameterCollection){
 		this.targetChannel=(Integer)_jobParameterCollection.getParameterValue(KEY_FOCUS_CHANNEL_INDEX);
+		this.imageOpeningTimeDelay=(Integer)_jobParameterCollection.getParameterValue(KEY_WAIT_IMAGE_OPENING);
 	}
 	
 	/**

src/main/java/feedback/fly/embryo/jobs/Job_FocusEmbryoAutoRotation.java

+package feedback.fly.embryo.jobs;
+
+
+public class Job_FocusEmbryoAutoRotation extends Job_FocusEmbryoAuto {
+	@Override
+	protected void preProcessOnline()throws Exception{
+		super.preProcessOnline();
+		Integer zoomIndex=(Integer)getSharedValue("Zoom Counter");
+		Double[] rotations=(Double[])this.getSharedValue("Rotations");
+		currentTable.setNumericValue(rotations[zoomIndex], curDInd, "Rotation");
+	}
+
+}

src/main/java/feedback/fly/embryo/jobs/Job_SelectMultipleEmbryosAutoRotation.java

@@ -278,7 +278,7 @@ public class Job_SelectMultipleEmbryosAutoRotation  extends Job_Default{
 		this.setSharedValue("Zoom Points", selectedPoints);
 		this.setSharedValue("Zoom Counter", -1);
 		this.setSharedValue("Selected Embryo Rois", selectedEmbryoRois);
-
+		this.setSharedValue("Rotations", rotations);
 	}
 	
 	@Override