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ALMF
feedback-fly-embryo-crocker
Commits
6de27a2c
Commit
6de27a2c
authored
Dec 10, 2020
by
Aliaksandr Halavatyi
Browse files
adding PathUtils
parent
c271b750
Changes
3
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Inline
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src/main/java/feedback/fly/embryo/utils/PathUtils.java
0 → 100644
View file @
6de27a2c
package
feedback.fly.embryo.utils
;
import
java.io.File
;
public
abstract
class
PathUtils
{
public
final
String
extractExperimentName
(
File
_imageFile
,
String
_endSequence
)
{
String
Exper_nm
=
_imageFile
.
getName
();
Exper_nm
=
Exper_nm
.
substring
(
0
,
Exper_nm
.
indexOf
(
_endSequence
));
return
Exper_nm
;
}
}
src/test/java/algorithm/tests/FindEmbryoOrientationTischi.java
View file @
6de27a2c
...
...
@@ -7,7 +7,6 @@ import java.io.File;
import
de.embl.cba.flyreg.FlyEmbryoRegistrationSettings
;
import
de.embl.cba.flyreg.FlyEmbryoSingleChannelRegistration
;
import
de.embl.cba.morphometry.Utils
;
import
ij.ImagePlus
;
import
loci.plugins.BF
;
import
net.imagej.ImageJ
;
...
...
@@ -35,7 +34,6 @@ public class FindEmbryoOrientationTischi {
final
FlyEmbryoSingleChannelRegistration
registration
=
new
FlyEmbryoSingleChannelRegistration
(
settings
,
opService
);
final
double
[]
calibration
=
Utils
.
getCalibration
(
imagePlus
);
registration
.
run
(
imagePlus
,
0
);
...
...
src/test/java/jobdistributors/run/debug/RunJobDistributor.java
View file @
6de27a2c
package
jobdistributors.run.debug
;
import
feedback.fly.embryo.jobdistributors.JobDistributor_AutoSelectionMultiple_AFocus_Rotation_Split
;
//
import feedback.fly.embryo.jobdistributors.JobDistributor_ManualSelection3DMultiple_AFocus_Rotation_Split;
//
import feedback.fly.embryo.jobdistributors.JobDistributor_AutoSelectionMultiple_AFocus_Rotation_Split;
import
feedback.fly.embryo.jobdistributors.JobDistributor_ManualSelection3DMultiple_AFocus_Rotation_Split
;
import
ij.IJ
;
import
net.imagej.ImageJ
;
public
class
RunJobDistributor
{
public
static
void
main
(
String
[]
args
)
{
//
Class<?> clazz = JobDistributor_ManualSelection3DMultiple_AFocus_Rotation_Split.class;
Class
<?>
clazz
=
JobDistributor_AutoSelectionMultiple_AFocus_Rotation_Split
.
class
;
Class
<?>
clazz
=
JobDistributor_ManualSelection3DMultiple_AFocus_Rotation_Split
.
class
;
//
Class<?> clazz = JobDistributor_AutoSelectionMultiple_AFocus_Rotation_Split.class;
// start ImageJ
ImageJ
ij2
=
new
ImageJ
();
...
...
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