feedback-fly-embryo-crocker issueshttps://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues2022-10-05T15:03:55Zhttps://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/24Check and test Protocol for CZI files2022-10-05T15:03:55ZAliaksandr HalavatyiCheck and test Protocol for CZI filesMake sure Autofocus procedure works correctlyMake sure Autofocus procedure works correctlyhttps://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/23Make the protocol with 3 Jobs (no hi res focusing)2022-10-05T13:55:43ZAliaksandr HalavatyiMake the protocol with 3 Jobs (no hi res focusing)https://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/22Defining Embryo rotation2022-10-05T13:54:25ZAliaksandr HalavatyiDefining Embryo rotationStill fails when embryos contain "Empty areas" in DAPI channelStill fails when embryos contain "Empty areas" in DAPI channelhttps://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/21Selected Embryo ROIs are not displayed correctly2022-10-05T12:44:37ZAliaksandr HalavatyiSelected Embryo ROIs are not displayed correctlyThis issue can be linked to the wrong file associations when folder on the levelup is monitored. Needs to be checkedThis issue can be linked to the wrong file associations when folder on the levelup is monitored. Needs to be checkedhttps://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/20Broken dependencies in AutoMic table2022-10-05T12:32:00ZAliaksandr HalavatyiBroken dependencies in AutoMic table@halavaty
When folder on one level above the saving folder is monitored, dependencies between LowZoom images and High Zoom images get corrupted@halavaty
When folder on one level above the saving folder is monitored, dependencies between LowZoom images and High Zoom images get corruptedhttps://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/13Discuss "hacks" Alex added to MyPiC with Antonio2019-11-11T14:18:16ZTimothy Jessen FuquaDiscuss "hacks" Alex added to MyPiC with AntonioTalk to Antonio to see how we want MyPiC changes made available. Alex made a few modifications to MyPiC so the automation would work. One of these was changing the number of samples that could be selected.Talk to Antonio to see how we want MyPiC changes made available. Alex made a few modifications to MyPiC so the automation would work. One of these was changing the number of samples that could be selected.Aliaksandr HalavatyiAliaksandr Halavatyihttps://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/6Job #1 cover-slip locating2018-07-06T14:59:41ZTimothy Jessen FuquaJob #1 cover-slip locatingSometimes this job exceeds the z-boundaries of the scope, and stops the pipeline.Sometimes this job exceeds the z-boundaries of the scope, and stops the pipeline.https://git.embl.de/grp-almf/feedback-fly-embryo-crocker/-/issues/5Some new requests2018-07-06T09:47:20ZTimothy Jessen FuquaSome new requestsHi Alex,
I have some things that I would like to be implemented into the program if possible:
1) Is it possible during embryo selection that only embryos selected have some 488 expression?
2) Is it possible the program the microscope t...Hi Alex,
I have some things that I would like to be implemented into the program if possible:
1) Is it possible during embryo selection that only embryos selected have some 488 expression?
2) Is it possible the program the microscope to increase its laser power the deeper it goes through the sample? Is there a simple function for this?
3) Do you know any way for the embryo to automatically become rotated (lying horizontal) so save time on acquisition?
Cheers,
TimAliaksandr HalavatyiAliaksandr Halavatyi