From 0c660d2b993c1df38355e72aa470c773073b611d Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Thu, 5 Oct 2023 15:55:13 +0200
Subject: [PATCH] Corrected upper clipping range in focus-adaptive projection
---
extensions/chaeo/tests/test_zstack.py | 3 ++-
extensions/chaeo/zmask.py | 2 +-
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/extensions/chaeo/tests/test_zstack.py b/extensions/chaeo/tests/test_zstack.py
index 1ac0321c..2257b90b 100644
--- a/extensions/chaeo/tests/test_zstack.py
+++ b/extensions/chaeo/tests/test_zstack.py
@@ -106,7 +106,8 @@ class TestZStackDerivedDataProducts(unittest.TestCase):
dff['centroid-0'].to_numpy(),
dff['centroid-1'].to_numpy(),
dff['zi'].to_numpy(),
- self.stack
+ self.stack,
+ degree=4,
)
self.assertEqual(img.shape[0:2], self.stack.shape[0:2])
diff --git a/extensions/chaeo/zmask.py b/extensions/chaeo/zmask.py
index 3ef3cd97..f624beec 100644
--- a/extensions/chaeo/zmask.py
+++ b/extensions/chaeo/zmask.py
@@ -181,7 +181,7 @@ def project_stack_from_focal_points(
zi_image = xy_features.reshape(
stack.hw
).round().clip(
- 0, stack.nz
+ 0, (stack.nz - 1)
).astype('uint16')
return np.take_along_axis(
--
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