From 0cce040f51a749d1740ee58880e95bec8b8d1214 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Tue, 1 Oct 2024 10:30:47 +0200
Subject: [PATCH] Repaired assumed prefix of serialized ROI set
---
model_server/base/roiset.py | 2 +-
model_server/conf/testing.py | 3 +--
2 files changed, 2 insertions(+), 3 deletions(-)
diff --git a/model_server/base/roiset.py b/model_server/base/roiset.py
index 8b764277..cfeec9ee 100644
--- a/model_server/base/roiset.py
+++ b/model_server/base/roiset.py
@@ -954,7 +954,7 @@ class RoiSet(object):
return interm
- def serialize(self, where: Path, prefix='') -> dict:
+ def serialize(self, where: Path, prefix='roiset') -> dict:
"""
Export the minimal information needed to recreate RoiSet object, i.e. CSV data file and tight patch masks
:param where: path of directory in which to write files
diff --git a/model_server/conf/testing.py b/model_server/conf/testing.py
index dd60e586..85f33a66 100644
--- a/model_server/conf/testing.py
+++ b/model_server/conf/testing.py
@@ -112,8 +112,7 @@ def setup_test_data():
raise Exception('Could not find test data, try setting environmental variable UNITTEST_DATA_ROOT.')
meta['root'] = Path(root)
- op_ev = os.environ.get('UNITTEST_OUTPUT', (meta['root'] / 'test_output'))
- meta['output_path'] = Path(op_ev)
+ meta['output_path'] = meta['root'] / 'test_output'
meta['output_path'].mkdir(parents=True, exist_ok=True)
# resolve relative paths
--
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