From 5bd8917877d720c4baaaec8202a31dcdbafd713a Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Wed, 20 Dec 2023 10:27:12 +0100
Subject: [PATCH] Added superclass for semantic segmentation models and
modified ilastik pixel classification to inherit from it
---
extensions/chaeo/examples/export_patch_focus_metrics.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/extensions/chaeo/examples/export_patch_focus_metrics.py b/extensions/chaeo/examples/export_patch_focus_metrics.py
index 8e5fa332..9e668a99 100644
--- a/extensions/chaeo/examples/export_patch_focus_metrics.py
+++ b/extensions/chaeo/examples/export_patch_focus_metrics.py
@@ -9,7 +9,7 @@ from skimage.filters import gaussian, sobel
from extensions.ilastik.models import IlastikPixelClassifierModel
from extensions.chaeo.products import export_3d_patches_with_focus_metrics, export_patches_from_zstack
-from extensions.chaeo.zmask import ZMaskObjectTable
+from extensions.chaeo.zmask import RoiSet
from model_server.accessors import generate_file_accessor, InMemoryDataAccessor, write_accessor_data_to_file
from model_server.workflows import Timer
@@ -58,7 +58,7 @@ def export_patch_focus_metrics_from_multichannel_zstack(
# filters=zmask_filters,
# expand_box_by=zmask_expand_box_by,
# )
- obj_table = ZMaskObjectTable(
+ obj_table = RoiSet(
obmask.get_one_channel_data(pixel_class),
stack.get_one_channel_data(zmask_channel),
mask_type=mask_type,
--
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