From 699dafb5802b541fe0ed68ec1c8885e62ca9633d Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Wed, 3 Jul 2024 14:20:46 +0200
Subject: [PATCH] Trying several things to read dependencies from
pyproject.yaml
---
conda-recipe/meta.yaml | 46 +++++++++++++++++++++++-------------------
tests/_conf.py | 4 ----
2 files changed, 25 insertions(+), 25 deletions(-)
diff --git a/conda-recipe/meta.yaml b/conda-recipe/meta.yaml
index e75bc05d..93430101 100644
--- a/conda-recipe/meta.yaml
+++ b/conda-recipe/meta.yaml
@@ -1,10 +1,11 @@
{% set name = "model_server" %}
{% set version = "2024.7.1" %}
-{% set pyproject = load_file_data('../pyproject.toml') %}
+{% set pyproject = load_file_data('pyproject.toml') %}
+{% set pp = pyproject.get('project') %}
package:
- name: {{ name|lower }}
- version: {{ version }}
+ name: {{ pp.get('name') }}
+ version: {{ pp.get('version') }}
source:
- path: ../dist/{{ name }}-{{ version }}.tar.gz
@@ -23,23 +24,26 @@ requirements:
- pip
run:
- python >=3.9
-# - czifile
-# - fastapi>=0.101.*
-# - ilastik=1.4.*
-# - imagecodecs
-# - jupyterlab
-# - matplotlib
-# - numpy=1.*
-# - pandas=1.*
-# - pillow
-# - pydantic=1.10.*
-# - python=3.9.*
-# - pytorch=1.*
-# - scikit-image>=0.21.*
-# - scikit-learn>=1.3.*
-# - tifffile
-# - uvicorn>=0.23.*
-# - zstd=1.5.5
+# { % for dep in pyproject["dependencies"] % }
+# - {{ dep.lower() }}
+# { % endfor % }
+ - czifile
+ - fastapi>=0.101.*
+ - ilastik=1.4.*
+ - imagecodecs
+ - jupyterlab
+ - matplotlib
+ - numpy=1.*
+ - pandas=1.*
+ - pillow
+ - pydantic=1.10.*
+ - python=3.9.*
+ - pytorch=1.*
+ - scikit-image>=0.21.*
+ - scikit-learn>=1.3.*
+ - tifffile
+ - uvicorn>=0.23.*
+ - zstd=1.5.5
- pip
@@ -47,7 +51,7 @@ test:
imports:
- model_server
commands:
- -{{ PYTHON }} -m unittest model_server
+ - python -m unittest discover
requires:
- pip
source_files:
diff --git a/tests/_conf.py b/tests/_conf.py
index e91920a9..61c211af 100644
--- a/tests/_conf.py
+++ b/tests/_conf.py
@@ -6,10 +6,6 @@ root = os.environ.get(
Path.home() / 'model_server' / 'testing'
)
-import sys
-print(sys.argv)
-
-
filename = 'D3-selection-01.czi'
czifile = {
'filename': filename,
--
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