From 6b93f16b4f2fd71a657d9411462b089594f5cf8e Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Fri, 22 Dec 2023 11:03:35 +0100
Subject: [PATCH] Changed ImageJ examples
---
README.md | 4 ++++
model_server/clients/examples/__init__.py | 0
.../clients/examples/run_simple_ilastik.py | 23 -------------------
3 files changed, 4 insertions(+), 23 deletions(-)
delete mode 100644 model_server/clients/examples/__init__.py
delete mode 100644 model_server/clients/examples/run_simple_ilastik.py
diff --git a/README.md b/README.md
index f4b67954..bcd0d0d2 100644
--- a/README.md
+++ b/README.md
@@ -10,5 +10,9 @@ model_server implement image analysis jobs for online use (e.g. in feedback micr
`git clone https://almf-staff:KJmFvyPRbpzoVZDqfMzV@git.embl.de/rhodes/model_server.git`
5. Open the newly created project root: `cd model_server`
6. Create the environment: `mamba create -n model_server_env --override-channels -c pytorch -c ilastik-forge -c conda-forge ilastik`
+7. Activate the environment: `mamba activate model_server_env`
+
+# Examples
+
\ No newline at end of file
diff --git a/model_server/clients/examples/__init__.py b/model_server/clients/examples/__init__.py
deleted file mode 100644
index e69de29b..00000000
diff --git a/model_server/clients/examples/run_simple_ilastik.py b/model_server/clients/examples/run_simple_ilastik.py
deleted file mode 100644
index 6315ee41..00000000
--- a/model_server/clients/examples/run_simple_ilastik.py
+++ /dev/null
@@ -1,23 +0,0 @@
-"""
-Debug a client request sequence from the same environment as the server
-"""
-
-from model_server.clients.util import get_client
-from model_server.clients import ilastik_map_objects_simple
-
-if __name__ == '__main__':
-
- img_abspath = 'C:\\Users\\rhodes\\projects\\proj0004-marine-photoactivation\\data\\exp0021\\B2\\20230320-153317\\Selection\\Selection--W0000--P0001-T0001.czi'
-
- params = {
- 'pixel_classifier_path': 'c:/Users/rhodes/projects/proj0011-plankton-seg/exp0019/px-03.ilp',
- 'object_classifier_path': 'c:/Users/rhodes/projects/proj0011-plankton-seg/exp0019/obj-07.ilp',
- 'channel': 4,
- }
-
- outfile = ilastik_map_objects_simple.main(
- get_client(port=6221),
- img_abspath,
- params
- )
- print(f'Success: {outfile}')
\ No newline at end of file
--
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