From 6e315a2b8205ad8a00bc553cd79124bc20617b79 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Mon, 16 Oct 2023 16:09:17 +0200
Subject: [PATCH] Trying to recreate error during inference
---
.../transfer_labels_to_ilastik_object_classifier.py | 11 +++++++++--
1 file changed, 9 insertions(+), 2 deletions(-)
diff --git a/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py b/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py
index 8100537e..ed4d5f1d 100644
--- a/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py
+++ b/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py
@@ -7,6 +7,7 @@ import pandas as pd
import uuid
from extensions.chaeo.util import autonumber_new_file
+from extensions.ilastik.models import IlastikObjectClassifierModel
from model_server.accessors import generate_file_accessor
def get_dataset_info(h5, lane=0):
@@ -137,8 +138,14 @@ def generate_ilastik_object_classifier(template_ilp, where: str, lane=0):
for zi in range(0, nz):
lag[f'{zi}'] = np.array([0., float(get_label(zi))])
+ return new_ilp
+
if __name__ == '__main__':
- generate_ilastik_object_classifier(
+ new_ilp = generate_ilastik_object_classifier(
'c:/Users/rhodes/projects/proj0011-plankton-seg/exp0014/template_obj.ilp',
'c:/Users/rhodes/projects/proj0011-plankton-seg/exp0009/output/labeled_patches-20231016-0002'
- )
\ No newline at end of file
+ )
+
+ mod = IlastikObjectClassifierModel({'project_file': new_ilp})
+
+ print(mod.project_file_abspath)
\ No newline at end of file
--
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