From 71ce1f57e7e6dd4a44f859f5365e23308a7fdb56 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Mon, 23 Sep 2024 11:33:46 +0200
Subject: [PATCH] Repaired a few things that were causing ilastik test failures
---
tests/test_ilastik/test_ilastik.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/tests/test_ilastik/test_ilastik.py b/tests/test_ilastik/test_ilastik.py
index 35a41813..fd6893a5 100644
--- a/tests/test_ilastik/test_ilastik.py
+++ b/tests/test_ilastik/test_ilastik.py
@@ -363,7 +363,7 @@ class TestIlastikOnMultichannelInputs(conf.TestServerBaseClass):
acc_input = generate_file_accessor(self.pa_input_image)
acc_obmap = generate_file_accessor(res.object_map_filepath)
self.assertEqual(acc_obmap.hw, acc_input.hw)
- self.assertEqual(len(acc_obmap._unique()[1]), 3)
+ self.assertEqual(len(acc_obmap.unique()[1]), 3)
def test_api(self):
@@ -401,9 +401,9 @@ class TestIlastikObjectClassification(unittest.TestCase):
stack_ch_pa = stack.get_mono(conf.meta['roiset']['patches_channel'])
seg_mask = generate_file_accessor(data['multichannel_zstack_mask2d']['path'])
- self.roiset = RoiSet(
+ self.roiset = RoiSet.from_binary_mask(
stack_ch_pa,
- get_label_ids(seg_mask),
+ seg_mask,
params=RoiSetMetaParams(
mask_type='boxes',
filters={'area': {'min': 1e3, 'max': 1e4}},
--
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