From c712a665806e1157ed419493d88731e65a038512 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Fri, 1 Sep 2023 16:43:07 +0200
Subject: [PATCH] Still working to decode model_id and run inference in ImageJ
Jython environment
---
imagej/infer_ilastik_by_api.py | 50 ++++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
create mode 100644 imagej/infer_ilastik_by_api.py
diff --git a/imagej/infer_ilastik_by_api.py b/imagej/infer_ilastik_by_api.py
new file mode 100644
index 00000000..f974f8a5
--- /dev/null
+++ b/imagej/infer_ilastik_by_api.py
@@ -0,0 +1,50 @@
+import httplib
+import urllib2
+import json
+import urllib
+
+import os
+import sys
+print(sys.version)
+
+from ij import IJ
+
+host = '127.0.0.1'
+port = 8001
+uri = 'http://{}:{}/'.format(host, port)
+
+abspath = IJ.getImage().getProp('Location')
+input_filename = os.path.split(abspath)[-1]
+
+outpath = 'C:\\Users\\rhodes\\projects\\proj0015-model-server\\resources\\testdata'
+
+global connection
+connection = httplib.HTTPConnection('127.0.0.1', 8001)
+def hit_endpoint(method, endpoint, params=None):
+ if not method in ['GET', 'PUT']:
+ raise Exception('Can only handle GET and PUT requests')
+ if params:
+ url = endpoint + '?' + urllib.urlencode(params)
+ else:
+ url = endpoint
+ connection.request(method, url)
+ resp = connection.getresponse()
+ print(method + ' ' + url + ', status ' + str(resp.status) + ':\n' + str(json.loads(resp.read())))
+ return resp
+
+hit_endpoint('GET', '/')
+hit_endpoint('GET', '/models')
+hit_endpoint('PUT', '/bounce_back', {'par1': 'ghij'})
+hit_endpoint('PUT', '/models/ilastik/pixel_classification/load/', {'project_file': 'demo_px.ilp'})
+resp = hit_endpoint('GET', '/models')
+
+print(resp.read())
+#print(json.loads(resp.read())) # trying to extract model_id, but json.loads throws an error
+
+#infer_params = {
+# 'model_id': model_id,
+# 'input_filename': input_filename,
+# 'channel': 0
+# }
+#
+#hit_endpoint('PUT', '/infer/from_image_file', infer_params)
\ No newline at end of file
--
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