From e276916ce3d3d6a6706b82393d02b86304f0c25f Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Thu, 2 Nov 2023 14:21:20 +0100
Subject: [PATCH] Change to default data directory
---
conf/defaults.py | 2 +-
conf/testing.py | 8 ++++----
extensions/ilastik/conf.py | 2 +-
3 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/conf/defaults.py b/conf/defaults.py
index 5d22087c..55b114f2 100644
--- a/conf/defaults.py
+++ b/conf/defaults.py
@@ -1,6 +1,6 @@
from pathlib import Path
-root = Path.home() / 'model-server' / 'sessions'
+root = Path.home() / 'model_server' / 'sessions'
subdirectories = {
'logs': 'logs',
diff --git a/conf/testing.py b/conf/testing.py
index 1c2b0cf3..33cc0859 100644
--- a/conf/testing.py
+++ b/conf/testing.py
@@ -1,6 +1,6 @@
from pathlib import Path
-root = Path.home() / 'model-server' / 'testing'
+root = Path.home() / 'model_server' / 'testing'
filename = 'D3-selection-01.czi'
czifile = {
@@ -54,9 +54,9 @@ monozstackmask = {
}
ilastik_classifiers = {
- 'px': 'demo_px.ilp',
- 'pxmap_to_obj': 'demo_obj.ilp',
- 'seg_to_obj': 'new_auto_obj.ilp',
+ 'px': root / 'ilastik' / 'demo_px.ilp',
+ 'pxmap_to_obj': root / 'ilastik' / 'demo_obj.ilp',
+ 'seg_to_obj': root / 'ilastik' / 'new_auto_obj.ilp',
}
output_path = root / 'testing_output'
diff --git a/extensions/ilastik/conf.py b/extensions/ilastik/conf.py
index de14a50c..835e8a80 100644
--- a/extensions/ilastik/conf.py
+++ b/extensions/ilastik/conf.py
@@ -1,5 +1,5 @@
from pathlib import Path
paths = {
- 'project_files': Path.home() / 'model-server' / 'ilastik'
+ 'project_files': Path.home() / 'model_server' / 'ilastik'
}
\ No newline at end of file
--
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