From faa943d9e0ba6b692a2680d88b665b895a44640b Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Mon, 30 Oct 2023 11:55:11 +0100
Subject: [PATCH] No longer need cleanup script, getting correct results
---
.../transfer_labels_to_ilastik_object_classifier.py | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py b/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py
index 748212ce..d9696e5a 100644
--- a/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py
+++ b/extensions/chaeo/examples/transfer_labels_to_ilastik_object_classifier.py
@@ -98,7 +98,7 @@ def generate_ilastik_object_classifier(
# delete existing classification weights
if (k := f'ObjectExtraction/RegionFeatures/{lane:04d}') in h5.keys():
del h5[k]
- if (k := 'ObjectClassification/ClassificationForests') in h5.keys():
+ if (k := 'ObjectClassification/ClassifierForests') in h5.keys():
del h5[k]
return new_ilp
@@ -156,9 +156,7 @@ if __name__ == '__main__':
label_names,
)
- from extensions.chaeo.examples.test_modify_object_classifier import modify_ilastik_object_classifier
- auto_ilp = modify_ilastik_object_classifier(new_ilp)
- # auto_ilp = new_ilp
+ auto_ilp = new_ilp
def infer_and_compare(ilp, prefix, raw, mask, labels):
mod = PatchStackObjectClassifier({'project_file': root / ilp})
--
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