diff --git a/analysis/revision-remote_species.ipynb b/analysis/revision-remote_species.ipynb index b267f571f916453032a85d353c82cedf5508c5a5..c47af5ec79d8dd8aa9bf875137ab771ee050168c 100644 --- a/analysis/revision-remote_species.ipynb +++ b/analysis/revision-remote_species.ipynb @@ -155,7 +155,9 @@ " counts = unrelated_with_EC.groupby(['ec overlap']).apply(len)\n", " for i, c in enumerate(counts.values):\n", " ax.text(i-0.1, 4., str(c), fontsize='x-large')\n", - " ax.set_ylim(0, 5);" + " ax.set_ylim(0, 5);\n", + " \n", + " return b" ] }, { @@ -253,7 +255,8 @@ } ], "source": [ - "same_structure_same_EC(yeast_annot, yeast_foldseek, human_annot)" + "same_structure_same_EC(yeast_annot, yeast_foldseek, human_annot)\n", + "plt.savefig(\"../data/yeast.svg\")" ] }, { @@ -340,7 +343,8 @@ } ], "source": [ - "same_structure_same_EC(arabidopsis_annot, arabidopsis_foldseek, human_annot, lowest_relevant_OG=\"Eukaryota\")" + "same_structure_same_EC(arabidopsis_annot, arabidopsis_foldseek, human_annot, lowest_relevant_OG=\"Eukaryota\")\n", + "plt.savefig(\"../data/arabidopsis.svg\")" ] }, {