diff --git a/resources_to_s3_NF/jbrowse_script_slug.sh b/resources_to_s3_NF/jbrowse_script_slug.sh index ca41d774aed7cb8b110a7df5ca6088a1a3b3a503..26e69e59e02451910e925b8edc03dfeba35e16c9 100755 --- a/resources_to_s3_NF/jbrowse_script_slug.sh +++ b/resources_to_s3_NF/jbrowse_script_slug.sh @@ -9,7 +9,6 @@ sort -t , -k1,1 | awk -F, '{ print "jbrowse add-assembly https://s3.embl.de/annelids/"$1"/"$2" \ -n \""$1"\" --displayName \""$3"\"" }' -# Tracks tail -n +1 tracks.csv | # it should not be tracks sort -t , -k1,1 -k5,5 -k2,2 | awk -F, '{ print "jbrowse add-track https://s3.embl.de/annelids/"$1"/"$5"/"$3".vcf.gz \