diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index b3e233c32c456a81813d7be357f8c564f671853b..b8f9672b292e884d60edf644e0f5fb0b48592263 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -52,6 +52,7 @@ kustomize_build_apply: - envsubst < deployment/jbrowse2-dep.tmpl > deployment/jbrowse2-dep.yaml - kubectl apply -k deployment - kubectl -n $NS wait --for=condition=available --timeout=60s deploy/jbrowse2 + - kubectl -n $NS rollout status deployment/jbrowse2 dependencies: - cluster_access_test diff --git a/image/jbrowse_script.sh b/image/jbrowse_script.sh index 9273eecc2e65d19476500a0f6bd4a9718bee4b9a..d6b1623b18b873e0b32c0851a3ca08edf5370806 100755 --- a/image/jbrowse_script.sh +++ b/image/jbrowse_script.sh @@ -3,5 +3,5 @@ jbrowse create annelids cd annelids jbrowse add-assembly https://s3.embl.de/annelids/pdumv021/pdumv021_genome.fa.gz --name pdumv021 -jbrowse add-track https://s3.embl.de/annelids/pdumv021/pdumv021.sorted.gff.gz -d "Kevin pdumv021 GTF file" -n "Genes models" --category "Annotations" +jbrowse add-track https://s3.embl.de/annelids/pdumv021/pdumv021.gff.gz -d "Kevin pdumv021 GTF file" -n "Genes models" --category "Annotations" jbrowse add-track https://s3.embl.de/annelids/pdumv021/transdecoder.gff.gz -d "Kevin runs transdecoder" -n "Transdecoder results" --category "Annotations"