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Closed
Open
Created Jul 13, 2020 by Christian Tischer@tischer

Launching jupyter notebook from interactive cluster job

@pape @heriche @pecar

I am starting this issue to document/ discuss attempts launching jupyter notebooks as interactive GPU cluster jobs.

I talked with Jure and he pointed me to below documentation:

  • https://wiki.embl.de/cluster/Env#Graphical_Access
  • https://wiki.embl.de/cluster/Slurm#Interactive_jobs

My plan is to try to use above documentation and run:

  • source /g/almf/software/miniconda3/run_conda.sh
  • conda activate stardist-gpu
  • cd /g/cba/exchange/stardist/examples/2D
  • jupyter notebook 2_training.ipynb

I'll let you know how it goes, but I am also happy to get any kind of input.

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