Commit 2ebdeeb1 authored by Michael Hall's avatar Michael Hall
Browse files

update schedule format

parent ce9753fa
......@@ -5,37 +5,53 @@
- ~~Set up a VM with singularity sudo access~~
- ~~Maybe a talk about NextFlow ?~~ Next training
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# Schedule
* What is a container? https://scicore-unibas-ch.github.io/singularity-slides/
## [What is a container?](https://scicore-unibas-ch.github.io/singularity-slides/)
**Slides - https://scicore-unibas-ch.github.io/singularity-slides/**
* What is Singularity?
* How do I Install it?
* [How do I create my own containers?](https://slides.com/mbhall88/making-containers)
- Writing "recipe"/definition files
* Help
* Runscript
* Post
* Environment
* Test
- Recipe development using a sandbox and the shell command
- Remote builds
* [How do I access containers written by other people and/or share my own?](https://slides.com/mbhall88/remote-container-systems)
- Singularity Hub
* Connecting a GitHub repository
* Triggering builds
* Pulling containers
- Sylabs Cloud
* Creating a project
* Remote building
* Pulling containers
- Docker Hub
* Pulling containers
* How do I run a container on the EMBL cluster?
* How do I access data from a container?
* How do I use containers with workflow systems?
- Snakemake
- Nextflow
* Running services as instances (RStudio. MongoDB...)
* How do I install Singularity in my environment
* Troubleshooting, common mistakes
* Singularity community
## [How do I create my own containers?](https://slides.com/mbhall88/making-containers)
**Slides - https://slides.com/mbhall88/making-containers**
- Writing "recipe"/definition files
- Recipe development using a sandbox and the shell command
- Remote builds
## [How do I access containers written by other people and/or share my own?](https://slides.com/mbhall88/remote-container-systems)
**Slides - https://slides.com/mbhall88/remote-container-systems**
* Singularity Hub
* Sylabs Cloud
* Docker Hub
* Quay.io and Biocontainers
---
## How do I run a container on the EMBL cluster?
## How do I access data from a container?
## How do I use containers with workflow systems?
**Slides -**
- Snakemake
- Nextflow
---
## Running services as instances (RStudio. MongoDB...)
## How do I install Singularity in my environment
## Troubleshooting, common mistakes
## Singularity community
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