Commit e5547ae0 authored by Sudeep Sahadevan's avatar Sudeep Sahadevan
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remove airway use case

parent 43e065fc
%% Cell type:markdown id:7ca3358f tags:
## Functional programming and `toolz` use cases
### Streaming read count data and filtering
This example is a adapted from Juan Nunez-Iglesias' [Linux conference Australia talk in 2016](https://www.youtube.com/watch?v=INAvD4Kmdbc). Refer to [his github repo](https://github.com/jni/functional-programming-in-python) for additional examples.
#### Airway dataset
Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B, Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R Jr, Tantisira KG, Weiss ST, Lu Q. “RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells.” [PLoS One. 2014 Jun 13;9(6):e99625](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0099625)
Airway smooth muscle cells were treated with dexamethasone, a synthetic steroid with anti-inflammatory effects and expression levels were measured using RNA-seq.