Commit 48c3e34e authored by Constantin Pape's avatar Constantin Pape

Change all names to ai4ia and rename utils to tools

parent 42daed9d
......@@ -4,7 +4,7 @@ Training and inference scripts for deep learning tools for cell segmentation in
Available tools:
- [stardist](https://github.com/mpicbg-csbd/stardist): stardist for convex object segmentation
- utils: functionality for visualisation and job submission on compute clusters
- tools: functionality for visualisation and job submission on compute clusters
## Data Layout
......
......@@ -44,7 +44,7 @@ CUDA_VISIBLE_DEVICES=0 predict_stardist_2d /path/to/data /path/to/model
The `CUDA_VISIBLE_DEVICES=0` part determines which gpu is used. If you have a machine with multiple GPUs and don't want to
use the first one, you need to change the `0` to the id of the GPU you want to use.
In order to run these scripts on the embl via slurm, you can use the `submit_slurm` script from `deep_cell.utils`, e.g.
In order to run these scripts on the embl via slurm, you can use the `submit_slurm` script from `deep_cell.tools`, e.g.
```
submit_slurm train_stardist_2d /path/to/data /path/to/model
```
......
from setuptools import setup, find_packages
setup(
name="deep_cell.stardist",
name="ai4ia.stardist",
packages=find_packages(),
version="0.0.1",
author="Constantin Pape",
url="https://github.com/constantinpape/deep-cell",
author="Constantin Pape, Christian Tischer",
url="https://git.embl.de/grp-bio-it/ai4ia.git",
license='MIT',
entry_points={
"console_scripts": [
......
from setuptools import setup, find_packages
setup(
name="deep_cell.embl_tools",
name="ai4ia.tools",
packages=find_packages(),
version="0.0.1",
author="Constantin Pape",
url="https://github.com/constantinpape/deep-cell",
author="Constantin Pape, Christian Tischer",
url="https://git.embl.de/grp-bio-it/ai4ia.git",
license='MIT',
entry_points={
"console_scripts": [
"view_data = utils_impl.view_data:main",
"submit_slurm = utils_impl.submit_to_slurm:main"
"view_data = tools_impl.view_data:main",
"submit_slurm = tools_impl.submit_to_slurm:main"
]
},
)
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